Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1150 ATGGGACATGTATATGATGACAGGCTAACCATTTCTCTGGAAGAGTTGGGCTTTAATGCTGAAAATGGTAGCAACAGGGGAAGGATGGGCAGGAGGAGCTATGACGACGACGCCAAAACGTTCAAATCCAAGAACCTTGAGTATGAAAGGAAAAGAAGAGAGAAGCTCAGTACTAGGCTCTTGATGCTGAGGTCTTTAGTACCCATTGTCACAAATATGAACAAAGCAACCATTATTGATGATGCAATCACTTATATCAAGGAGTTGCAAGATCAAGTTGAGACCCTCACACGAGAGCTGCTTCAGGAAACGGAAGCAACCTCAAAAGAAGTAGCAAAGCCAAAGATAAATGATTTTGATCTTGCAGAAGAGATGAAGAAATGGGGAATACAGGAAGAGGTACATGTGACAAAAATTGATGGGAATAAATTGTGGGTCAAGATGATCATTGAGAACAAGAGGGGGAGTTTCAAGAAATTGGTTGAGTTTCTGGATACTTATGGCATTGCATTGATAGACACCAATCTCACAGCCATGAAAGGAGCCTTATTGATAACAACATGCATACAGAAAATCCACGTCACTGGCTCCGTTTGGTCAAACAAACGGCACTAA 615 0.4163 MGHVYDDRLTISLEELGFNAENGSNRGRMGRRSYDDDAKTFKSKNLEYERKRREKLSTRLLMLRSLVPIVTNMNKATIIDDAITYIKELQDQVETLTRELLQETEATSKEVAKPKINDFDLAEEMKKWGIQEEVHVTKIDGNKLWVKMIIENKRGSFKKLVEFLDTYGIALIDTNLTAMKGALLITTCIQKIHVTGSVWSNKRH* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1150 204 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 193 - -
Lja2g1150 204 SMART finulus 46 95 IPR011598 GO:0046983
Lja2g1150 204 Pfam Helix-loop-helix DNA-binding domain 45 90 IPR011598 GO:0046983
Lja2g1150 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 101 IPR036638 GO:0046983
Lja2g1150 204 Coils Coil 79 106 - -
Lja2g1150 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Lja2g1150 204 PANTHER TRANSCRIPTION FACTOR DYT1 12 193 - -
Lja2g1150 204 Gene3D - 34 105 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1150 Lja-Chr2 10968227 10970712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1150 28 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.286 1.35e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1150 HLH 8.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1150 - - lja:Lj2g3v1278950.2 307.76