Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1149 ATGATGACAGATGGGAAAATATATTTTCATTTCAATATGGAAGAGAGAAATGATCATGCTGAGAAACTGGATGAAGTTTTGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAACTTGTTGGGTTCTACCTCAAGAGAAAGATTCAGCAGAGACCTCTTTCCATTGAGCTCATCAAGCAACTTGATATCTACAAATATGACCCTTGGGATCTTCCAAAGTTGGCCTCAACAGGAGAGAAAGAGTGGTATTTCTACTGTCCTAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGAACTGACAGACCCATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCCCTAGTTTTTTACAAAGGCAGAGCTGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACCCAATGTCCCAAAAGAAGTACATAGATAAAACCATTCCAGCTAATGAATCTTGGGCAATCTGCAGGATATTTAAGAAAACCAACTCTACAGCACAGAGAGCTCTGTCTCACTCTTGGATCTCTTCCCTACCTGAAACAAGAACCTCTGATATGCTAACTAAAGAACAAGAAAGCACCCAGTTTTATTCACCCAACATGCCACTGACAAAGAAAACTAGCTTATTAGCCAGTCAGTTTTGCACTAACAACAATGATGGCCAAGACTTAACCACTGCTAGTAGTACTTTTTGTCCTTTAGATAATGTTGCCTCTTATAAATCCCTTCTTAACCCTTTGATGCACAAAGCCTTTGACCATTTTCCCCTATCAAATGGAGATCTCAACACTGGCTTGATATTCTCATCATCTCCACTTGAAACAATATCTAATGCTAATGCCAAATCTTCAATGGATGTTTCTTCCATGTTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAGCAACAACACTCCTCATGAGGACACAACTACAAGCTTCAATGGTGGGTTGCAACTGCAAGACCACTGTCATGACTACCTAATGCAAGCCACATTTGGGAACCAATATGATAATAATGCATTAGTGAAGGTTCCTAATGTGAATATTGTGCCTCGTTTTGGTGACCAAGAGTTGGAGACAGTACGATCCATTGGGTTCCCATTCAGTATTGGTGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTAATTGTCCTTGTGATGTTCCCTTGAGTCATTCCACAACCAAGTGCTATACTTAG 1284 0.4136 MMTDGKIYFHFNMEERNDHAEKLDEVLLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDPMSQKKYIDKTIPANESWAICRIFKKTNSTAQRALSHSWISSLPETRTSDMLTKEQESTQFYSPNMPLTKKTSLLASQFCTNNNDGQDLTTASSTFCPLDNVASYKSLLNPLMHKAFDHFPLSNGDLNTGLIFSSSPLETISNANAKSSMDVSSMLLNMSSSVLGDFSNNTPHEDTTTSFNGGLQLQDHCHDYLMQATFGNQYDNNALVKVPNVNIVPRFGDQELETVRSIGFPFSIGDAWKSNMLWDTSSNCPCDVPLSHSTTKCYT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1149 427 Pfam No apical meristem (NAM) protein 29 154 IPR003441 GO:0003677|GO:0006355
Lja2g1149 427 ProSiteProfiles NAC domain profile. 27 185 IPR003441 GO:0003677|GO:0006355
Lja2g1149 427 PANTHER PROTEIN FEZ ISOFORM X1 13 425 - -
Lja2g1149 427 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 425 - -
Lja2g1149 427 SUPERFAMILY NAC domain 25 185 IPR036093 GO:0003677|GO:0006355
Lja2g1149 427 Gene3D NAC domain 36 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1149 Lja-Chr2 10962748 10966113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1149 14 329 NAC Transcription Factor Family AT1G26870 53.963 3.61e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1149 NAM 5.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1149 - - gmx:100783995 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1149 2 10962748 10966113 Lja2g1149 2 10962748 10966113 ECH