Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1140 ATGGCTGGGCACTATGGCATTCCAATGCTCCTCTCTCCAAGACCCTATGAAAACCCTTCAAGGCAACACACTCCCAACACCAGTGTCTTTGGTTTCCACCTCCAACCACCACACCCCAACCAGCAGGAAAGGTCCTCATCCTCCTCCAATAGGACCCCCGGTAGGCCACGTGGCTCCAAGAACAAGCCGAAGCCCCAGATGCCAATCCCCAGGGACAATGATATGAAGTCAATAATAATTGATGTCGGTGTTGGACATGATGTCATGGAGGCAATAGCCCAGGTGGCCAACCACCACAACACCGGTGTCACAGTTGTCCATGCTGCTGGCACTATTTCTAACGTGACTCTGAGCCACCCTCTGACCCAAGCCCCTGCTGCCTTCATCGCCTATGGACCCTTTATTCTGTTGGGCCTCTCTGGATCCTATGTGACACCAACTGCTCTCAATGTTGGCTTTCCTTCTTCTCTTCCATCGTCCATCCCCAACCCCCTTTCCTCTGAGATTCACTCCAACTTCAAGATCTCCCTCTCTAGCTTCCAGGGAAAAGTCCTTAGTGGGAATGTTGCTGGGGAGGTCATAGCCGCGAATGGTGGGGTAAATATTACGGCTCTGCTTGTTAAGAACCCAGAGTATTATAGTTATGGTGTCGCCACTGAATGCGATATTGAGGAAGAAGATGTTGATAACCCTCTTGGCGGTGAAGGTGGTGGTGATCGCGAAGGTGCTAGTGGTTCTGGAGGCGTTAATTGTGCTAGTGGTTTTGGCATGTCTGGTTTCAACGAAGATTGA 792 0.5101 MAGHYGIPMLLSPRPYENPSRQHTPNTSVFGFHLQPPHPNQQERSSSSSNRTPGRPRGSKNKPKPQMPIPRDNDMKSIIIDVGVGHDVMEAIAQVANHHNTGVTVVHAAGTISNVTLSHPLTQAPAAFIAYGPFILLGLSGSYVTPTALNVGFPSSLPSSIPNPLSSEIHSNFKISLSSFQGKVLSGNVAGEVIAANGGVNITALLVKNPEYYSYGVATECDIEEEDVDNPLGGEGGGDREGASGSGGVNCASGFGMSGFNED* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1140 263 MobiDBLite consensus disorder prediction 17 56 - -
Lja2g1140 263 Gene3D - 76 213 - -
Lja2g1140 263 MobiDBLite consensus disorder prediction 224 263 - -
Lja2g1140 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 242 IPR014476 GO:0003680
Lja2g1140 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 73 197 - -
Lja2g1140 263 ProSiteProfiles PPC domain profile profile. 72 229 IPR005175 -
Lja2g1140 263 MobiDBLite consensus disorder prediction 1 74 - -
Lja2g1140 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 242 - -
Lja2g1140 263 CDD DUF296 76 195 IPR005175 -
Lja2g1140 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 197 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1140 Lja-Chr2 10902284 10903075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1140 32 251 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.761 6.46e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1140 - - lja:Lj2g3v1280070.1 504.212