Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1133 ATGGAATTGGAAGCTGCTGATCATCATCATCATCATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTTCAGCTCTTAGAGAAAACAGACCTTGATCTAGAAGATGTCTCTGAACAACAACAACAACAACCTTGTTCCACAACAGCACACGACGGTGGTGGAGACATCGTGGCCACGGCAGACCAGGCCAAGAAGCAGCCACCCAAGCGGGCCTCCACCAAGGACCGCCACACCAAGGTGGACGGCCGCGGCCGCCGGATCCGCATGCCTGCTGCCTGCGCCGCCAGGGTGTTCCAGCTGACGCGTGAGCTAGGACACAAGTCCGACGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCAGCAGTCATCGCCGCCACCGGGACTGGGACCATTCCTGCCAACTTCACCTCGCTCAACATCTCACTCCGCAGCTCCGGCTCCTCCATGTCGGCGCCGTCACACTACTTCCGTGGCAACTACTTCAGCCCCACCACCTTCTCCACCGCCGCCGCTTCTCAGCTTAGGAGCCGCGCCGAGTGGGACAGAAACATGAACATGAGCATGAGCAGTAACAACATGAATGAAGATTCTAGAAGGGTAACTATGTTGGAGAACCCTTCTTCTTCTCTCTCGTCGATTATGAATTTCAACTCTGTTAGCAACGTGAATGCCATGCTACAAGCGAAGCACGAGCTCCGGGAAGAGGAAGCCGCCGCCTCCGGCAGTGGCGGAGGATTTGAGTTGGTGACCGCGGATTCTGACGGAAGCTTGGGGAGAAAGAGGAGGCCGGAGCAAGAACTTTCACAGATGGGAAGTTACTTGTTACAATCCAACGTGGGGTCACTTCCGGCGAGCCACGCTTCCAATACGGCAGCGTTTTGGATGGTGGCGGGTAACGGCGGCAACCAAGGCGTGAGCGGTGGTGGTGGTGCTAGCAATGGCGATCCCATTTGGGCAATTCCATCAGTTGGGAATAGTGGGGTGTATAGAGGAGCCGTCCCCGCCGCTGCCGGAGGGATTCATTTCATGAATTTTGCTTCTCCGATGATGCCTTTTATGCCTGGAAGTCAATTAGGTTCAAGCCTAATGGGTAACGGTGGTGGCGGCAGCGGTGGTAGTGCATTTATGGGTGAAAGTAACTTAGGCATGCTTTCAGCCCTTAATGGCTATAGGCAGAATCCGGCCAACGGCCTTCCGGAGTCTCCGACCAGTGCCGGGCAACATCACGGTGGAGGAGGAGGAGATGATGGACATGATGACTCAACCAGTCAACATCCCTGA 1293 0.5568 MELEAADHHHHHHQNGIRTRPNFPLQLLEKTDLDLEDVSEQQQQQPCSTTAHDGGGDIVATADQAKKQPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSAPSHYFRGNYFSPTTFSTAAASQLRSRAEWDRNMNMSMSSNNMNEDSRRVTMLENPSSSLSSIMNFNSVSNVNAMLQAKHELREEEAAASGSGGGFELVTADSDGSLGRKRRPEQELSQMGSYLLQSNVGSLPASHASNTAAFWMVAGNGGNQGVSGGGGASNGDPIWAIPSVGNSGVYRGAVPAAAGGIHFMNFASPMMPFMPGSQLGSSLMGNGGGGSGGSAFMGESNLGMLSALNGYRQNPANGLPESPTSAGQHHGGGGGDDGHDDSTSQHP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1133 430 MobiDBLite consensus disorder prediction 392 407 - -
Lja2g1133 430 MobiDBLite consensus disorder prediction 36 83 - -
Lja2g1133 430 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 429 IPR005333 GO:0003700
Lja2g1133 430 MobiDBLite consensus disorder prediction 392 430 - -
Lja2g1133 430 MobiDBLite consensus disorder prediction 69 83 - -
Lja2g1133 430 MobiDBLite consensus disorder prediction 242 272 - -
Lja2g1133 430 Pfam TCP family transcription factor 74 234 IPR017887 -
Lja2g1133 430 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Lja2g1133 430 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 14 429 - -
Lja2g1133 430 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g1133 430 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1133 Lja-Chr2 10839705 10841621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1133 65 361 TCP Transcription Factor Family AT3G47620 45.373 1.18e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja2g1133 TCP 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1133 - - gmx:100809966 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1133 2 10839705 10841621 Lja2g1133 2 10839705 10841621 ECH