LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1127	ATGTCTAGCAGAAGATCCCGTTCTAGACAATCCGGTGGTTCATCTGAGATCTCTGATGCTCAAATCACCGATCTCATCTCCAAGTTACAACAACTTATCCCTGAGCTTCGTGCAAGACGCTCCGACAAGGTTTCGGCTGCGAAGGTATTGCAGGAGACTTGCAACTATATAAAGAACTTGCATAGGGAGGTTGATGATTTGAGTGACCGGTTATCGGAGCTTTTGGCGACCACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTCATGTAA	282	0.4645	MSSRRSRSRQSGGSSEISDAQITDLISKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLATTDSNSAQAAIIRSLLM*	94

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g1127	93	Coils	Coil	57	77	-	-
	Lja2g1127	93	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	6	60	IPR011598	GO:0046983
	Lja2g1127	93	Pfam	Helix-loop-helix DNA-binding domain	21	60	IPR011598	GO:0046983
	Lja2g1127	93	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	21	82	IPR036638	GO:0046983
	Lja2g1127	93	PANTHER	TRANSCRIPTION FACTOR PRE	1	93	IPR044293	GO:0006355\|GO:0040008\|GO:0046983
	Lja2g1127	93	CDD	bHLH_AtPRE_like	17	77	-	-
	Lja2g1127	93	PANTHER	TRANSCRIPTION FACTOR PRE6	1	93	-	-
	Lja2g1127	93	Gene3D	-	20	89	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1127	Lja-Chr2	10751933	10753171	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1127	1	93	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G47710	67.021	5.05e-35	113

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lja2g1127		HLH	7.5e-07	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1127	-		-	gmx:100804830	154.836

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1127	2	10751933	10753171	Lja2g1127	2	10751933	10753171	ECH
	Lja2g1127	2	10751933	10753171	Lja1g5503	1	94519021	94520673	ECH
	Lja2g1127	2	10751933	10753171	Lja2g1626	2	16171823	16174051	ECH