Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1125 ATGGATTTCTTCCCAACAAATTTCATGCTACAAACCCCTCACCATGATGATCATCATCAACCTCCACCTTCTCTCAACTCAATTCTACCTCATGATTATCATGGGGGACCAGCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATCGAACATGGAGAAGAAGCCAATAATGCTGAGGAAGATTTATCTGATGATGGATCTCAAGCAGGTGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACTCTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAGCCAGAAAGAAAAATGCAGCTTGCAAGAGCTCTTGGGTTGCAGCCTAGGCAGATTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATCTCCTTAAAAGACAGTATGATGCTATCAAGTCAGATAATGATGCACTTCAAGCTCACAACCAAAAACTTCAAGCAGAGATATTGGCACTGAAAAATAGGGAGCCTACTGAATCTATCAACCTTAATAAAGAAACTGAAGGATCCTCCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTAGATATCTCAAGAACACCAGCAATTGATAGTCCACTATCCACACATCATCACAACAGCAGAACACTCTTTCCACCCTCTGCTAGGCCCGCAGGATCAGTTGCTCATCAACTCTTCCAATCTTCTTCAAGGCCTGATCTTCAATGCCAGAAGATGGACCACATGGTCAAGGAAGAAAGCTTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCATGGTTGGAGCAGCAACATTTTAATTGA 843 0.433 MDFFPTNFMLQTPHHDDHHQPPPSLNSILPHDYHGGPAFLGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKSDNDALQAHNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTHHHNSRTLFPPSARPAGSVAHQLFQSSSRPDLQCQKMDHMVKEESLSNMFCGMDDQSGFWPWLEQQHFN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1125 280 Gene3D - 66 135 - -
Lja2g1125 280 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Lja2g1125 280 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Lja2g1125 280 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Lja2g1125 280 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Lja2g1125 280 MobiDBLite consensus disorder prediction 174 197 - -
Lja2g1125 280 MobiDBLite consensus disorder prediction 177 197 - -
Lja2g1125 280 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Lja2g1125 280 CDD homeodomain 74 130 IPR001356 GO:0003677
Lja2g1125 280 Coils Coil 121 169 - -
Lja2g1125 280 SMART HOX_1 72 133 IPR001356 GO:0003677
Lja2g1125 280 MobiDBLite consensus disorder prediction 50 79 - -
Lja2g1125 280 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Lja2g1125 280 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Lja2g1125 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 280 IPR045224 GO:0003700
Lja2g1125 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1125 Lja-Chr2 10732770 10735254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1125 1 280 Homeobox Transcription Factor Family AT1G69780 64.865 9.41e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g1125 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1125 K09338 - gmx:100808033 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1125 2 10732770 10735254 Lja2g1125 2 10732770 10735254 ECH
Lja2g1125 2 10732770 10735254 Lja2g1098 2 10407937 10410512 PCT