Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1123 ATGCAAGATATGAAGCAGCAGCAGAAGCAGAAGCAGTTGGCCAGTGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATTGGTCTCCATGGGACTGACAATTGGGCAATAATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGACTTCAAGAAAGGAGGATGGTCTCCAGAGGAAGATATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGGTGGACAGAAATAGCTAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAGTATGAAGCCTTAGCAAAAGAAAACAGCACATCATACATCAATTCAAATAACAAGAGGGTTATTTTCCAACAAGAGCATAAGACAGACACAGCATCAGAATCTGCAGTACTTAAGAAGATGAGGAGGTCCCATATCCCTGATGGCGCAGAAAAGATCAACTTTGCAGACAGATCACATAAACAAAATGGAACTCCTATGAATCAGCAGTCAAGAGCACCATTTGCTGTTTTACCTCAAAACTCTCATAATGTCAACAAGTTGCAAGACCAGGATCACGTCTGCAATGTGAAGTTTGGTGGTGATGCCCAAAACAACAAGATCGAAGGAACATATCTTAAAAAGGATGATCCAAAGATAAGTGCATTGATGCAGCAAGCAGAGCTACTAAGTTCACTGGCTCTAAAAGTTGATGTAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTCCTTCAAGAGTTTCTGAACCGAACTAAAGAATCAGATATTCCCGGATATAAGCTTCCAGATTTACAGCTTGCAGATCTGAAAGATTTATTGGATGACTTAAAGAGTTGTAGTGATGAAATCCAGACAAGTTGGAGGCATATGGAGCTATATGAAGACTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTCTCGTGCCCCATTCTGCTGGTGAGAATTTGGAACACTCACTGCATCAAAGTATTGGAACTGAACTGACGGCTATACAAATTGGAGATCAAAAAGGAGGAGGATGTGATCAAGTGGTTCTTTCTGGTGCAACTTTGGATCAAGACATGCTCCCATCTTGTGAGGAACAAATAAACAATAATGGTGTTGTTTCCGCCTTATCAAGTACAGACTTCAGTTCTCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGCTGCAGGAGTTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTCGGAATGGAGTCTTCATCTCTCAATCCAAGTGCCAAGCCTTCACAACCGCCGCCCTGCAAAAGAGCCCTCCTACAGAGCTTATAA 1425 0.4182 MQDMKQQQKQKQLASEESKKKERHIVTWTQEEDDILREQIGLHGTDNWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSTSYINSNNKRVIFQQEHKTDTASESAVLKKMRRSHIPDGAEKINFADRSHKQNGTPMNQQSRAPFAVLPQNSHNVNKLQDQDHVCNVKFGGDAQNNKIEGTYLKKDDPKISALMQQAELLSSLALKVDVENMDQSLENAWKVLQEFLNRTKESDIPGYKLPDLQLADLKDLLDDLKSCSDEIQTSWRHMELYEDSPSSSEHSTGSTLVPHSAGENLEHSLHQSIGTELTAIQIGDQKGGGCDQVVLSGATLDQDMLPSCEEQINNNGVVSALSSTDFSSPLQVTPLFRSLAAGVPSPQFSESERNFLMKTLGMESSSLNPSAKPSQPPPCKRALLQSL* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1123 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Lja2g1123 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Lja2g1123 474 Gene3D - 16 76 - -
Lja2g1123 474 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Lja2g1123 474 MobiDBLite consensus disorder prediction 450 474 - -
Lja2g1123 474 SMART sant 24 73 IPR001005 -
Lja2g1123 474 SMART sant 76 124 IPR001005 -
Lja2g1123 474 CDD SANT 80 121 IPR001005 -
Lja2g1123 474 Coils Coil 4 24 - -
Lja2g1123 474 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g1123 474 PANTHER TRANSCRIPTION FACTOR MYB88 8 471 - -
Lja2g1123 474 MobiDBLite consensus disorder prediction 328 347 - -
Lja2g1123 474 Pfam Myb-like DNA-binding domain 28 88 - -
Lja2g1123 474 CDD SANT 27 71 IPR001005 -
Lja2g1123 474 PANTHER MYB PROTEIN-RELATED 8 471 - -
Lja2g1123 474 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
Lja2g1123 474 Gene3D - 79 157 - -
Lja2g1123 474 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1123 Lja-Chr2 10690431 10697390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1123 13 323 MYB Transcription Factor Family AT2G02820 62.342 2.71e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1123 Myb_DNA-bind_6 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1123 K09422 - gmx:100807667 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1123 2 10690431 10697390 Lja2g1123 2 10690431 10697390 ECH
Lja2g1123 2 10690431 10697390 Lja2g1123 2 10690431 10697390 PCT