Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1121 ATGGGTAACTGTCTTGATTCTTCTGCTAAAGTTGATGCTGCTCAAAGCTCCAGATCCACTTCTGCATCAGGAATCTCAAAAACTACTCCTTCCAGCATTTCTATTTCCTCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCGAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTTAAGGCTTTCACATTCAATGAGCTGAAAAACGCCACCAGAAACTTCCGTCCCGACAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTATAAAGGATGGATTGATGAACACTCGTTTACAGCTGCAAAACCTGGTTCGGGAATGGTTGTTGCTGTGAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCACAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTCTACCATCCTAATCTCGTTAAACTAATTGGGTACTGCTTGGACGGAGAGAACCGGCTATTGGTCTACGAGTTCATGCCCAAAGGGAGCTTGGAGAATCATCTGTTTAGAAGGGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGACTCTCGTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTTCTGGATGCTGAGTTCAATGCTAAACTTTCTGATTTTGGCTTAGCTAAGGCGGGTCCTACTGGTGACAGAACTCATGTCTCTACTCAAGTCATGGGTACTCAAGGTTATGCTGCCCCTGAATATGTTGCAACTGGTCGGCTGACAGCCAAAAGTGACGTATACAGCTTCGGGGTTGTGTTGCTTGAGCTTCTATCTGGAAGACGAGCAGTTGACAAGACAATAGCTGGTGTGGACCAGAATCTGGTGGATTGGGCAAGACCATATTTGGGTGACAAACGAAGACTCTTCCGGATTATGGATTCCAAGTTGGAGGGACAGTATCCACAAAAAGGAGCCTTCATGGCTGCAACACTTGCTCTACAATGCCTTAACAATGAAGCCAAGGCAAGGCCTCCAATGACACAGGTTTTGGAAACTCTGGAACAGATAGAAGCTCCCAAAAATGCAGGAAGAAACTCCCTAGCACAACATCACAACAACAGATTCCAGACTCCTGTGAGAAGGTCTCCGGCGAGAAACAGGACACCTTTGAATCTAACTCCTACTGCATCGCCATTGCCATCGCCATTGCCAGCTCACCGACACTCTCCTCGTGCGCACTGA 1254 0.4641 MGNCLDSSAKVDAAQSSRSTSASGISKTTPSSISISSYSEKSNASSLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHSFTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLDGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWARPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNNEAKARPPMTQVLETLEQIEAPKNAGRNSLAQHHNNRFQTPVRRSPARNRTPLNLTPTASPLPSPLPAHRHSPRAH* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1121 417 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Lja2g1121 417 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 13 407 - -
Lja2g1121 417 MobiDBLite consensus disorder prediction 1 55 - -
Lja2g1121 417 MobiDBLite consensus disorder prediction 369 398 - -
Lja2g1121 417 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Lja2g1121 417 CDD STKc_IRAK 83 360 - -
Lja2g1121 417 PANTHER OS01G0588500 PROTEIN-RELATED 13 407 - -
Lja2g1121 417 MobiDBLite consensus disorder prediction 9 55 - -
Lja2g1121 417 ProSiteProfiles Protein kinase domain profile. 77 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1121 417 Gene3D Transferase(Phosphotransferase) domain 1 163 383 - -
Lja2g1121 417 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Lja2g1121 417 MobiDBLite consensus disorder prediction 368 417 - -
Lja2g1121 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lja2g1121 417 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1121 Lja-Chr2 10670810 10674545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1121 53 357 Glycoside Hydrolase AT3G07070 53.247 4.54e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja2g1121 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1121 - - gmx:100809778 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1121 2 10670810 10674545 Lja2g1121 2 10670810 10674545 ECH
Lja2g1121 2 10670810 10674545 Lja4g2160 4 23201069 23204246 PCT