Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1115 ATGGAAGATCATCATAACTTCTTGGATTCTAATAGTGATGAAGAGATTAGTAGCAAGGAACAAAAGCTTGAAGCAGCTAAAGGGGATATTGGAGAAGCTAGAGAAGAAAGCGAGAAGTTGAAGTTCTTATTAGCAACTAACCATAACCATGAAGAAAGTGAACTTGTGACCCTTTCTCTTGGGATTTCATCCCAAGGTAAGCCTACTAGTAAGGATGAGAAAAAGGATAGTAATAGAACTCAAAAGAGGGAAAATGAGGATGTGGATATAGGACTTGCACTTGGATTAGATGTCAGATTTGACCCTGCACCTGAAACTGAAGCTGCAATTAGTAATTTCAGCCAAGAAAGTAGTAGCACTAATGAGAAAGGGAAGGAAGAAGAACCAGCTGAGATGTGGCCACCCAGTAAAGTTTTGAAGACAATGAGAACTGGGGATAAAAGTACTGAAGCTAATCCTCAACATGCTCATCAGCTCAAGAAGACTAGGGTTTCTATCAGAGCCAGATGTGACTCTCCAACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAAAAAATAGCAAAAGGAAATCCATGTCCCCGTGCTTACTATCGATGCACTGTCTCTCCAACTTGTCCTGTGAGAAAACAGGTGCAGAGATGTGCTGAAGATATGTCCATATTGATTACCACCTATGAAGGAGTCCACAATCACCCACTTCCTCTTTCAGCTACTGCTATGGCCTCCACAACTTGTGCAGCTGCTTCCATGCTTCAGTGTCCTTCATCATTCAGTTCACATTCACAACAAGGACTAGAAAGCAAATATTCAGATATAGCACACATTATCAATAGTTCTTGTGCTGATGCTTACTGTTACAGTACTACCCCTAATGCTCTAAACTTCTCTACATGCCAAATTTCAAGACCAAATAATCAATTCCACTTCCCCAACTCTTCTATTTCAATCTTAAATTCTCACCCCACAATCACTCTAGACCTTGCAGCTGCATCATCATCAACTTCCTCTCATTCTGGAAAATTTTCTCAAATACCAAAATATTCTTCAACAAATCTTAATTTTTCCTCTGGTTTCTCTCCTCTACAATATAGCATCCCACAATCCCCATGGAGCAGTTATAGTAGTGGTAATTATTTCAAATCTGAAGGAACACTAGCACAAAATAGAAACCAGGGTGGTTACTTGCATATGTCTTCCTATGCTCTTAGGTACTCTCAACAAGGAAACTCGGTCTTATTTCCACCACCACCACCTTCTAAGAATATATCATCTAATAGAAGGTAA 1290 0.3984 MEDHHNFLDSNSDEEISSKEQKLEAAKGDIGEAREESEKLKFLLATNHNHEESELVTLSLGISSQGKPTSKDEKKDSNRTQKRENEDVDIGLALGLDVRFDPAPETEAAISNFSQESSSTNEKGKEEEPAEMWPPSKVLKTMRTGDKSTEANPQHAHQLKKTRVSIRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPTCPVRKQVQRCAEDMSILITTYEGVHNHPLPLSATAMASTTCAAASMLQCPSSFSSHSQQGLESKYSDIAHIINSSCADAYCYSTTPNALNFSTCQISRPNNQFHFPNSSISILNSHPTITLDLAAASSSTSSHSGKFSQIPKYSSTNLNFSSGFSPLQYSIPQSPWSSYSSGNYFKSEGTLAQNRNQGGYLHMSSYALRYSQQGNSVLFPPPPPSKNISSNRR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1115 429 MobiDBLite consensus disorder prediction 50 67 - -
Lja2g1115 429 Pfam WRKY DNA -binding domain 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1115 429 ProSiteProfiles WRKY domain profile. 170 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1115 429 MobiDBLite consensus disorder prediction 1 48 - -
Lja2g1115 429 MobiDBLite consensus disorder prediction 109 163 - -
Lja2g1115 429 Gene3D WRKY domain 160 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1115 429 Coils Coil 16 36 - -
Lja2g1115 429 MobiDBLite consensus disorder prediction 1 88 - -
Lja2g1115 429 SUPERFAMILY WRKY DNA-binding domain 169 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1115 429 SMART WRKY_cls 175 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1115 429 PANTHER WRKY TRANSCRIPTION FACTOR 72B 17 385 - -
Lja2g1115 429 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 17 385 IPR044810 GO:0003700
Lja2g1115 429 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1115 Lja-Chr2 10576147 10578739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1115 71 250 WRKY Transcription Factor Family AT5G15130 53.476 3.47e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g1115 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1115 - - lja:Lj0g3v0146729.2 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1115 2 10576147 10578739 Lja2g1115 2 10576147 10578739 ECH
Lja2g1115 2 10576147 10578739 Lja1g5491 1 94054460 94058737 ECH
Lja2g1115 2 10576147 10578739 Lja4g2169 4 23367900 23372203 ECH
Lja2g1115 2 10576147 10578739 Lja1g2885 1 34823187 34832763 ECH
Lja2g1115 2 10576147 10578739 Lja4g2169 4 23367900 23372203 PCT