Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1114 ATGGTACACTCCATTGCCATTAAGCCATGCCCAATCCCAACCCACTCTTTCATCACAACAAAGTCCATCACTTTTAGGGGTTTCAGTCCTTCTTCTTCAGCCACACCCACCACCTCTCTCACCCTTCCATCACTCTCTGTAAAATGCCGCCAAACCGAGCTCTTTGACTCCCCACAACGCCCTCCACCTCCGCCAGATTTGCCGCCCAGGGTTTATGTGGATCACTCCCTTTACAAAGGCAAAGCTGTGCTGACACTATCTCCTAAACCTCCGGAATTTTCGATGTTGGATTCTGGTGCAGTTAAAGTATCTAGGGAAGGTTATATTCTCTTCCAGTTTGCTCCTGCAGTTGGTGGTGGTACACGCTTATATGATTGGAACAGAAAGCAGGTATTCTCACTATCAGTAAATGAAATGGGAGCTCTAATTAGCCTTGGTGCAAGGGGGTCCTGTGAATTTGTACGTGATCCTTTTAAGGGAAAAAGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGGTTCTGGTCACTTGTTTAACTTAAGTGTTCAAAACAAGCTCAAGAATGTGGACGAAAGCATCTTTGTTCCTGTTACAAAAGCAGAGTTAGCAGTTTTTAACTCACTTTTCAATTTTATCTTGCCATACCTTCTAGGTTGGAATGCTTTTGGAAACTCCATAAAGCCAGGGGTATATAGCCGAGTGCATAATGCCAGCCAAGATACGGAGCAGAATATGAATGGAACAGTTGGGGATAATTTGTGA 780 0.441 MVHSIAIKPCPIPTHSFITTKSITFRGFSPSSSATPTTSLTLPSLSVKCRQTELFDSPQRPPPPPDLPPRVYVDHSLYKGKAVLTLSPKPPEFSMLDSGAVKVSREGYILFQFAPAVGGGTRLYDWNRKQVFSLSVNEMGALISLGARGSCEFVRDPFKGKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFILPYLLGWNAFGNSIKPGVYSRVHNASQDTEQNMNGTVGDNL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1114 259 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 62 248 - -
Lja2g1114 259 SUPERFAMILY ssDNA-binding transcriptional regulator domain 69 247 IPR009044 GO:0003677|GO:0006355
Lja2g1114 259 Pfam Whirly transcription factor 77 213 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lja2g1114 259 Gene3D Transcriptional Coactivator Pc4; Chain A 66 244 IPR009044 GO:0003677|GO:0006355
Lja2g1114 259 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 248 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1114 Lja-Chr2 10555451 10559441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1114 38 244 Whirly Transcription Factor Family AT1G14410 64.319 2.10e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lja2g1114 Whirly 4e-51 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1114 - - mnt:112091579 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1114 2 10555451 10559441 Lja2g1114 2 10555451 10559441 ECH
Lja2g1114 2 10555451 10559441 Lja2g1114 2 10555451 10559441 PCT