Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1111 ATGGAGTTTGCTTCTGTAAAATCTGAATCAAGTTTAGAAAGTCATAGGATGCTCATTATTGAAGGTGAAGCTAATACTAGTAAGGTTTTGAAAAGGAAGAGAAGAGATTCAACTGTGGCAGCTTTAAGGGTCAATGGACAAGAGCTGCAGCCACAGGGTGACCAACTAACCACCACCACTGTGAAGAGAAGCTCAAGGTTTAGGGGAGTAAGCAGACATAGGTGGACAGGAAGGTATGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAAAAGAAAGGAAAACAAGTATATTTGGGGGCTTACAATGATGAAGAAGCTGCAGCTAAAGCTTATGATTTGGCTGCAATCAAGTACTGGGGAACATCAACTATCACCAATTTCCCAGCATCAGTTTATGAGAATGAAATTGAGATAATGCAAACTGTAACAAAAGAAGAATATCTTGCTTCATTGAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATAGGGAGAGTGTTTGGCAACAAGTATCTCTACCTTGGAACTTACAGTACTCAAGAAGAGGCAGCCAGGGCATATGATATTGCAGCAATTGAATACAGAGGAATCCATGCAGTGACCAACTTTGACTTGAGTACTTACATTAGATGGTTAAGACCAGGTGCTCATTCAAATGCTGCTTCTCAAGAGCAAACCCCAAGTATAAATCCCCAACCCTTTACAACCTCTAACCTCATCCAAACTAGAGGAACAACTAAGGTATCCAATTTCAACCTCCATCCATTCCCTGGAGTTGAATTAGAAGATCACAAGAAAAAGCAAGAGATTTCCCAACATGTAACAACCCCTTTAAGTCCTTCCAACAAATCACCTTCCTCTACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAATTGTCACAGAGAAATCTGAATTATACTAATGAAGAAGCTGAAGAAATTGAATTGAAGAACACTCAACAAGGCAATGATGGGGTTGGAGGGAATTTGAATAATAAAAGGGCATGTAAGACCTCTTACATGTGTTCTTCCTACAGAAACAGCTTACCTGACTTGGAGTCCCCAGAAGAAACAACAATGCCACTGTCACTGTATCATGGTACCATGTTTCCCCCTATGGAATGA 1200 0.41 MEFASVKSESSLESHRMLIIEGEANTSKVLKRKRRDSTVAALRVNGQELQPQGDQLTTTTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAAKAYDLAAIKYWGTSTITNFPASVYENEIEIMQTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLRPGAHSNAASQEQTPSINPQPFTTSNLIQTRGTTKVSNFNLHPFPGVELEDHKKKQEISQHVTTPLSPSNKSPSSTALGLLLKSSVFRELSQRNLNYTNEEAEEIELKNTQQGNDGVGGNLNNKRACKTSYMCSSYRNSLPDLESPEETTMPLSLYHGTMFPPME* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1111 399 Gene3D AP2/ERF domain 65 134 IPR036955 GO:0003700|GO:0006355
Lja2g1111 399 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Lja2g1111 399 SUPERFAMILY DNA-binding domain 65 134 IPR016177 GO:0003677
Lja2g1111 399 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 ProSiteProfiles AP2/ERF domain profile. 66 132 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 SMART rav1_2 66 138 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 396 - -
Lja2g1111 399 SUPERFAMILY DNA-binding domain 167 228 IPR016177 GO:0003677
Lja2g1111 399 Pfam AP2 domain 65 124 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Lja2g1111 399 MobiDBLite consensus disorder prediction 279 309 - -
Lja2g1111 399 MobiDBLite consensus disorder prediction 294 309 - -
Lja2g1111 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1111 Lja-Chr2 10530032 10532242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1111 62 230 AP2-EREBP Transcription Factor Family AT5G57390 68.047 2.99e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja2g1111 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1111 - - gmx:100799621 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1111 2 10530032 10532242 Lja2g1111 2 10530032 10532242 ECH