Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1110 ATGGCAGATTTGTACACCTCCCTTCTTGTGATCTGTTTGGTAGTCATCATACCTACCTTGTATGCCAATGTCAAAGAGGACCAGGTTTACTGGGATAGGCAGATGAAGGCGCTTGATACTACATATTGGAAGGACAAAGCATTAAATGCTACAAAGGCAAACCAAGAAGCTTATTTTCCTGATCCATATGCAGTCACCAGAAACCTCACTTCTAGTATTAGCCAACTGATAGTTGGTGGCAAGACAGGAAGAAGGCATTTAGGGGGACGTGGAGGTGGCCGATGCATGGCAACAAACCCCATTGATAGGTGTTGGAGGTGTGATCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAGGGATTTGGAAGAAACACCATTGGTGGAAAGAATGGTCCAATCTACGTGGTAACTGATTCCTCAGATAATGACATGATGAACCCAATTCCAGGTACCCTTCGGTATGCAGTTACAAGAAATGGACCCTTGTGGATCATCTTTGCTCGCAGCATGACCATCAGGCTCAACCAGGAGCTCATGATTTCAAGTGACAAGACCATTGATGGCAGAGGAGCTGATATTGTCATTGCTAATGGTGCTGGTCTTACGATCCAGTATGTTAAGAATGTGATCGTCCATGGGATTAAGATTTTTGACAGTCAAGTGGGAAATGGTGGACTTATCAGAGATTCAGAGGACCACTATGGTTTTAGGACACAGAGTGATGGTGATGGAATTTCCATTTTTGGCTCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACGGCCATTTCACAGACCACAATGAGGTGATGCTTTTTGGTGCTAGTGACGCTTATGAGGGTGATAAGATAATGCAAATCACACTTGCATTCAACCATTTTGGTAAGAGATTAATCCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCATGCATCCTACCATTATTAGTGAAGGCAACCGATTCATAGCCCCCGACAACATTCATGCCAAAGAGATAACAAAGAGGGAGTACACTCTGGAGGCAGAGTGGAGCAAGTGGCAATGGAGATCAATCAACGACGAGTACATGAACGGCGCATTTTTCAGACAAGCTGGACCAGAATTGACTAACAGGCCATTCACAAGGAGAGACATGATCAAAGCTAAGCCAGGAACATATGTGGGAAGGCTCACTCGTTATGCTGGAAGCCTTCGATGCACTGTTGGAAAGCCTTGTTAG 1347 0.4499 MADLYTSLLVICLVVIIPTLYANVKEDQVYWDRQMKALDTTYWKDKALNATKANQEAYFPDPYAVTRNLTSSISQLIVGGKTGRRHLGGRGGGRCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPIYVVTDSSDNDMMNPIPGTLRYAVTRNGPLWIIFARSMTIRLNQELMISSDKTIDGRGADIVIANGAGLTIQYVKNVIVHGIKIFDSQVGNGGLIRDSEDHYGFRTQSDGDGISIFGSSNVWIDHVSMRNCRDGLIDAIMGSTAITISNGHFTDHNEVMLFGASDAYEGDKIMQITLAFNHFGKRLIQRMPRCRWGFVHVVNNDYTHWEMYAIGGSMHPTIISEGNRFIAPDNIHAKEITKREYTLEAEWSKWQWRSINDEYMNGAFFRQAGPELTNRPFTRRDMIKAKPGTYVGRLTRYAGSLRCTVGKPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lja2g1110 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lja2g1110 448 Pfam Pectate lyase 181 364 IPR002022 -
Lja2g1110 448 PANTHER PECTATE LYASE 6 448 - -
Lja2g1110 448 SMART amb_all 173 370 IPR002022 -
Lja2g1110 448 PANTHER PECTATE LYASE 18-RELATED 6 448 IPR045032 GO:0030570
Lja2g1110 448 Pfam Pectate lyase, N terminus 42 87 IPR007524 GO:0030570
Lja2g1110 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Lja2g1110 448 Gene3D - 98 441 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1110 Lja-Chr2 10525568 10527945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1110 13 448 Polysaccharide Lyase AT1G14420 58.407 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1110 K01728 - gmx:100796307 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1110 2 10525568 10527945 Lja2g1110 2 10525568 10527945 ECH
Lja2g1110 2 10525568 10527945 Lja1g5490 1 93973020 93977501 ECH
Lja2g1110 2 10525568 10527945 Lja4g2172 4 23402482 23404959 ECH
Lja2g1110 2 10525568 10527945 Lja1g2894 1 34969781 34971956 ECH
Lja2g1110 2 10525568 10527945 Lja2g1640 2 16319169 16321666 ECH