Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1105 ATGGGGTTGGGTGCTGAGAATGGTGCTAAGGTGGTGGTGGAGTCTTGGGATGTGAGTAAATCAAAAGGGAGGAAGAAAAAGAAGAAGGAGGTTGAGGGGGTGGTGGAAGAGGAAGAAACTGGGTGTTGGGTTGGGTTTAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCGGTCAGTGGCCCCAGCTCTCATTATGCTGAAAGTAAATCAACTAATTATACAAGTAGGGACCAACAAACAGCTCCAGTAGTCCCTTCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAGACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTTTGTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCAGAGAGTTTTCTTGGTGAAGGCGGGTTTGGCTGTGTTTTCAAGGGGTGGATCGAAGAAAATGGAACTGCTCCAGTGAAACCTGGGACAGGGCTTACTGTTGCGGTAAAAACCCTGAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCACCCAAACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGCTGCTAGTTTATGAGTTCATGTCTCGGGGAAGCCTCGAAAACCACTTATTTAGGAGAGCCCTGCCTCTTCCTTGGTCCATTAGAATGAAAATTGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAGAGACCTGTAATATACAGGGATTTTAAAACCTCTAACATACTACTTGATGCAGACTACAATGCCAAGCTCTCGGACTTTGGTCTTGCCAAAGATGGTCCTGAAGGTGATAAAACCCACGTGTCTACTCGAGTGATGGGTACCTATGGTTATGCAGCGCCAGAATATGTCATGACAGGTCATCTCACATCAAAAAGTGACGTGTACAGTTTTGGAGTGGTGCTCCTTGAGATGTTGACTGGGAGAAGATCTATGGACAAACACCGGCCCAACGGTGAGCACAACCTTGTGGAATGGGCTCGACCACATCTTGGAGAGAGGAGAAGGTTCTATCGGTTGATAGACCCTCGTCTGGAAGGTCACTTTTCAATAAAAGGAGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCCTTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTGGAAGCCTTAAAGCCTCTGCCAAGCCTTAAGGACATGGCTAGCTCTTCGTATTATTTCCAGACAATGCAAGCTGAGCGCTTCAGAGCGAGTCCAAATACTAGAAGCACGCCAACACAAGGATCATTGCTCACACGGAACGGACAGCAGCGAAGGAGCCTTTCAATGGCAAATGGTACTCATGCATCTCCTTATCACCATCAATTTCCCCAACTATCACCAAAACCCAATAGCAAAGCATAG 1464 0.459 MGLGAENGAKVVVESWDVSKSKGRKKKKKEVEGVVEEEETGCWVGFRFIGSCISSRSKVDSSVSGPSSHYAESKSTNYTSRDQQTAPVVPSTTTSNAESNSSTSRLEEELKIASRLRKFCFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEEDQRLLVYEFMSRGSLENHLFRRALPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPSLKDMASSSYYFQTMQAERFRASPNTRSTPTQGSLLTRNGQQRRSLSMANGTHASPYHHQFPQLSPKPNSKA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1105 487 MobiDBLite consensus disorder prediction 57 104 - -
Lja2g1105 487 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1105 487 PANTHER OS01G0588500 PROTEIN-RELATED 64 477 - -
Lja2g1105 487 MobiDBLite consensus disorder prediction 436 487 - -
Lja2g1105 487 CDD STKc_IRAK 137 414 - -
Lja2g1105 487 SUPERFAMILY Protein kinase-like (PK-like) 115 440 IPR011009 -
Lja2g1105 487 MobiDBLite consensus disorder prediction 57 103 - -
Lja2g1105 487 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 64 477 - -
Lja2g1105 487 Pfam Protein tyrosine and serine/threonine kinase 136 411 IPR001245 GO:0004672|GO:0006468
Lja2g1105 487 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Lja2g1105 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Lja2g1105 487 Gene3D Phosphorylase Kinase; domain 1 111 216 - -
Lja2g1105 487 Gene3D Transferase(Phosphotransferase) domain 1 217 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1105 Lja-Chr2 10490237 10494334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1105 79 427 Glycoside Hydrolase AT3G07070 52.408 3.72e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja2g1105 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1105 - - gmx:100787151 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1105 2 10490237 10494334 Lja2g1105 2 10490237 10494334 ECH