Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1103 ATGACGACGGAGTTCGAAGATTCCAAGCTTCTTGCGGTGGAGAGTTCCTTCGACAACCGTTACTCCCGCCACGCGCGCGAGTCGCTCGACGAATTGACTGATACAAGTTTCACCATCACCGACCCTTCCGTCTCCGGCCACCCAATCGTCTTCGCCAGCCTCGGCTTCCTCAAGATGACCGGGTTCTCGCGGGATGAGGTTGTTGGCAGAGGCGGGGGGATGTTCCAGGGGCCGGGAACCTGTAGAAGGTCGGTGATGGCGATTCGTGAGGCCGTAAGGGAAGAGAAGGAGGCTCAGGTCGTTTTGTTGAATTACCGCAAGGATGGCACGCCGTTTTGGATGCTGCTTCTTGTGTGTCCGGTTTTCAGTGCGAGCTCCGGTGGTGTTGTTCACTTTGTCGCCGTTCAGGTGCCGCTTCACCGCCGGAGACACGGGGATTTTCCCGGAGGAGGAGGTGGGGGGTTTTCACAGGTGCATGATTTTGTGTTCCGGTGTTGTCGGAAGGAAGTGTGCTCTGATTCTTTGGCTGAACTTGGTCGTGTTTCTTCCCTCAATCAAGTGTTGGAGAATGATGTCACGGAGTTGGAGAGTGAAGAGCCATGTGAGGCAAGTGATGTTGAGAAGAGTAGAGCTGTGACTGCCTTGGACAACATCTTTTCTGTGCTGACCTACTATAGCGAGTCCGTGGGCAGATTGGTGTGTAGAAAGAGATGCAGCGTTCCCGACGTGGGTGTTTTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGAATTTGCCAGACATGCCTATAGTCTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAGAGATGAAGTATTGGGCCGCAACTGCAGATTTTTAGGAGGAACAGATACTGATACCACAACTTTACATCTGATTCGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAAGATAAAAGCTCATTTTGGAATCTTCTTCACATGTCACCTGTTCGTGAGGCTTCTGGCAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGAATATAAAAACGAAGATAGACCGTGTCGAAACCCTGATAGGAGGCAGCTTAGCGTGGTTGGTGTGGTCAAGGTTGCGGTGAGGAGTTCATCAATGACTGCAGGAACGTCCAAATAG 1203 0.4963 MTTEFEDSKLLAVESSFDNRYSRHARESLDELTDTSFTITDPSVSGHPIVFASLGFLKMTGFSRDEVVGRGGGMFQGPGTCRRSVMAIREAVREEKEAQVVLLNYRKDGTPFWMLLLVCPVFSASSGGVVHFVAVQVPLHRRRHGDFPGGGGGGFSQVHDFVFRCCRKEVCSDSLAELGRVSSLNQVLENDVTELESEEPCEASDVEKSRAVTALDNIFSVLTYYSESVGRLVCRKRCSVPDVGVFSSSLIISLGRIKQSFVLTNPNLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLGGTDTDTTTLHLIRESIKTEQPCTVRILNYRKDKSSFWNLLHMSPVREASGKVAYFVGVQIEDEYKNEDRPCRNPDRRQLSVVGVVKVAVRSSSMTAGTSK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1103 400 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 136 IPR035965 -
Lja2g1103 400 CDD PAS 49 135 IPR000014 -
Lja2g1103 400 Coils Coil 178 198 - -
Lja2g1103 400 ProSiteProfiles PAS repeat profile. 21 70 IPR000014 -
Lja2g1103 400 TIGRFAM sensory_box: PAS domain S-box protein 273 358 IPR000014 -
Lja2g1103 400 TIGRFAM sensory_box: PAS domain S-box protein 49 134 IPR000014 -
Lja2g1103 400 PANTHER PROTEIN TWIN LOV 1 13 396 - -
Lja2g1103 400 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Lja2g1103 400 PANTHER PROTEIN TWIN LOV 1 13 396 - -
Lja2g1103 400 SUPERFAMILY PYP-like sensor domain (PAS domain) 263 359 IPR035965 -
Lja2g1103 400 CDD PAS 269 358 IPR000014 -
Lja2g1103 400 Gene3D PAS domain 36 147 - -
Lja2g1103 400 Gene3D PAS domain 260 396 - -
Lja2g1103 400 Pfam PAS domain 44 136 IPR000014 -
Lja2g1103 400 Pfam PAS domain 260 359 IPR000014 -
Lja2g1103 400 SMART pac_2 323 363 IPR001610 -
Lja2g1103 400 SMART pac_2 99 142 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1103 Lja-Chr2 10468899 10472677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1103 20 389 AGC Kinase Gene Family AT5G58140 32.673 6.40e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1103 - - gmx:100785562 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1103 2 10468899 10472677 Lja2g1103 2 10468899 10472677 ECH