Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1098 ATGGCTGGTAGTAAGCTTTATGGGGGTTCCAACATGGCCCTTCTGCTCCAAAATGAAAGGCTTCCTTGCTCCTCTGAAGTTCTTGACTCTCTCTGGGGTCACACCTCTAACCCTGCTTCTTTCCAAGGGTCGAAATCGGTGGTTGATTTTGAGAATGTTGGTGGCAGCAGGGTCACTGACAGGTCCTTCTTTCAACAGCTTGACAAGGAAGAGAACTGTGATGATGATTATGATGCTTGCTTCCATCAACCAGGGAAGAAGAGAAGGCTCTCTAGTGAACAAGTTCAGTTCCTTGAAAGGAGCTTTGAGGTGGAAAACAAGCTTGAACCTGAAAGGAAGGTTCAGCTTGCAAAAGAGCTTGGGTTGCAGCCAAGACAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTACAAGACCAAGCAGTTAGAAAAGGACTATGGCACATTGAAAGCTAGCTTTGACAGACTCAAAGGTGACTATGATAATCTTGCTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGATTCCCAGAGATAAAGAGAAAGAGAATTCAGATGACAAGTCATCCCCTGATGCTGCAGAACCTATGGATTTAATCTCAAATGCAAATTCTGAAAATGGGTCCAAAGTGCCACTCCCTAATATGGTAACATGCTGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGATGTGCTTGATTCGGATAGCCCACATTGCACTGATGGGAACCACTTCATGGAGCCTGCTGATTCCTCTCATGCTTTCGAACCAGACCACTCAGATTTCTCACAGGATGAAGAGGATAACCTCGGTGAAAACCTCTTGAACCTGCCTTGCTTGCCAAAGGTTGAAGATGTCTGTTATGATGACCTGCCTGATAACTCTTGTAATTTTGGCTTCCCGGTTGAAGATCAAACCTTCTGTTTCTGGCCTTACTGA 963 0.4444 MAGSKLYGGSNMALLLQNERLPCSSEVLDSLWGHTSNPASFQGSKSVVDFENVGGSRVTDRSFFQQLDKEENCDDDYDACFHQPGKKRRLSSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKDYGTLKASFDRLKGDYDNLAQENDKLKEEVNSLKNKLIPRDKEKENSDDKSSPDAAEPMDLISNANSENGSKVPLPNMVTCCKQEDANSAKSDVLDSDSPHCTDGNHFMEPADSSHAFEPDHSDFSQDEEDNLGENLLNLPCLPKVEDVCYDDLPDNSCNFGFPVEDQTFCFWPY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1098 320 MobiDBLite consensus disorder prediction 179 219 - -
Lja2g1098 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 320 IPR045224 GO:0003700
Lja2g1098 320 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Lja2g1098 320 Coils Coil 154 181 - -
Lja2g1098 320 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 320 - -
Lja2g1098 320 MobiDBLite consensus disorder prediction 179 200 - -
Lja2g1098 320 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Lja2g1098 320 Gene3D - 79 142 - -
Lja2g1098 320 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lja2g1098 320 SMART HOX_1 83 145 IPR001356 GO:0003677
Lja2g1098 320 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Lja2g1098 320 CDD homeodomain 84 142 IPR001356 GO:0003677
Lja2g1098 320 Gene3D - 143 183 - -
Lja2g1098 320 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Lja2g1098 320 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Lja2g1098 320 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1098 Lja-Chr2 10407937 10410512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1098 84 249 Homeobox Transcription Factor Family AT3G01470 49.704 3.69e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g1098 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1098 - K09338 adu:107489132 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1098 2 10407937 10410512 Lja2g1098 2 10407937 10410512 ECH
Lja2g1125 2 10732770 10735254 Lja2g1098 2 10407937 10410512 PCT