Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1089 ATGGTTGCTAGGGACTACTACAAGATACTCAAGGTGAACCGTGATGCCACGGATGAGGAGCTGAAGAATGCTTACAAGAGGTTAACCATGCAGTGCCACCCAGATAACAACCACCACCAGTGCCCTCTTCGGAAACAAGAGTTTGAAGCCAAGTTCAACAAGATAACTGAAGCCTATGCTGTTCTGAGTGACCCCAAGAAGCGCCAGATCTATGACCTCTACGGCCACTATCCCATTAACCTGAAGAAAAGTGGTGATGGGGATGTTGGGAATAATCTGAATGAAGATGAAGATTCAGGGGTAGTTGTGATCAGGTTGGAATGTACCCTTGTGGAGCTTTACAAAGGTTGCAGGAAGAAATTGAAAATCTTGAGGACTGTTCTTGATGAATTTGGAAATTTGAAGACTGTAGAAGAAATCTTGAAGATTGATGTTAAACCTGGTTGGAAGAAGGGCACAAAAATTACTTTTCCTGGGAAGGGAAATGTTGAACCAGGAGCTACTGCAGCTGATTTAATTTTTGTGGTGGATGAGAGACCGCATGGAATTTTCAAGAGATATGGAAATGATTTGGTGGTGACCCAGAAGATATTACTGCTTGATGCCCTGGTGGGAACAACACTCAACTTGACAGCCTTGGATGGAAGAGATATCACGTTCGAAGTGACTGATATTGTGAAACCAGGATACGAGATGGTGGTCCCAAATGAAGGTATGCCCCTTTCAAAGGACCCTAGCAAGAAAGGGAACCTCATATTCAAGTTTGATGTTATGTTTCCATCAAGGCTAACCACACAACAAGAACATGATCTAAAAAGGATTCTTAGTGATGCTGATAGATAA 843 0.4282 MVARDYYKILKVNRDATDEELKNAYKRLTMQCHPDNNHHQCPLRKQEFEAKFNKITEAYAVLSDPKKRQIYDLYGHYPINLKKSGDGDVGNNLNEDEDSGVVVIRLECTLVELYKGCRKKLKILRTVLDEFGNLKTVEEILKIDVKPGWKKGTKITFPGKGNVEPGATAADLIFVVDERPHGIFKRYGNDLVVTQKILLLDALVGTTLNLTALDGRDITFEVTDIVKPGYEMVVPNEGMPLSKDPSKKGNLIFKFDVMFPSRLTTQQEHDLKRILSDADR* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1089 280 CDD DnaJ_C 102 263 - -
Lja2g1089 280 Gene3D - 103 179 - -
Lja2g1089 280 PRINTS DnaJ domain signature 25 40 IPR001623 -
Lja2g1089 280 PRINTS DnaJ domain signature 67 86 IPR001623 -
Lja2g1089 280 PRINTS DnaJ domain signature 7 25 IPR001623 -
Lja2g1089 280 PRINTS DnaJ domain signature 47 67 IPR001623 -
Lja2g1089 280 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 277 - -
Lja2g1089 280 Pfam DnaJ C terminal domain 103 260 IPR002939 -
Lja2g1089 280 Gene3D - 181 261 - -
Lja2g1089 280 CDD DnaJ 5 64 IPR001623 -
Lja2g1089 280 SUPERFAMILY Chaperone J-domain 4 85 IPR036869 -
Lja2g1089 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 103 181 IPR008971 GO:0006457|GO:0051082
Lja2g1089 280 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Lja2g1089 280 Gene3D DnaJ domain 2 102 IPR036869 -
Lja2g1089 280 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Lja2g1089 280 SMART dnaj_3 4 67 IPR001623 -
Lja2g1089 280 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 3 277 - -
Lja2g1089 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 269 IPR008971 GO:0006457|GO:0051082
Lja2g1089 280 Pfam DnaJ domain 5 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1089 Lja-Chr2 10332063 10333668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1089 4 74 C2H2 Transcription Factor Family AT1G74250 36.620 1.06e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1089 K09510 - gmx:100778440 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1089 2 10332063 10333668 Lja2g1089 2 10332063 10333668 ECH