Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1082 ATGACTAACCCCTCTACCTTCCCCACCATTCTCTCCTTCATTCTGCTACTCTTTTTCCCCACTTCCAACTCTATTCACACGCATACTGACACTTGCTCTTCCATTACTCACCCATGCCCACCATTCCCTCACCACCTTCCTTACCCATTCTCCACTTCACCTGGCTGCGGCCACCCTTCTTTCCACATAAACTGCTCCTCCCCTCACTCTCACATCTCCATTAACAACCTCACTTTCTCCATCCTCTCTTACAACTCTTCCTCTCTTTTCCTCTCCCCACACCACTCCAACAACACTTGCCCTTCTTCTCACTTCCTTTCAATCCCCAACAAACCCATCAATCTTTCTCACTCCCCTTTCACAGTCTCTGACGCTTCGTGTTCCCGCCTCTCCTTCCTCCAACCATGCTCCCCTCCAACGCTTCCAAACTGCAGCCACTGCCCCTGGGAATGTAAAGTTATCAAAAGCCCGGGTGAGATTCTTCCAGATTGTAGATCCACACACCACTCTGCTTCTGACTCTGGAACTTGCCAGAGCGATGTTCTGGGTTACCTCAACAAGATGCTCCTCGAAGACGGGATTGAAGTCGAGTGGGACGAATCGCAGGACCCTTACTTCTCAAGCTGCAGAGAATGCCGAATCAATGGTGGATTCTGCGGGTTCAATTCATCAGACCCGGATAAGCACTTCCTCTGTTTCGGCTCCAAATCGTCGCTCTCGCAGCTGTGGATTCAGAACGTGGGGAAGCCTAATCGGAGAACAGTTCTCTGCCTCGTCATCGCATTCACGTCCCTGCTGCTTCTTACCCTCGTCGCCATCACCATTCTCCGTTCCCGGAGCTTGAAACCGTCACCGGAAACAGAGGAAGACCCGACTACAATCTTCCTCCACAACCACCGTTCCGCTAGCCTCCTCCCTCCGGTGTTCACCTACGATGAGCTGGATACTTCAACCAACCACTTCGACCCCAAGCGGAAGATCGGCGACGGCGGGTTCGGCTCTGTCTACCTAGGCCACCTCTTCGACGGGAGGCTAGCTGCGGTGAAGCACCTCCACCGGCAGCACCACCCGGCGGCGTTCTCCACCAAATCCTTCTGCAACGAGATCTTAATCCTCTCCTCCATCGACCATCCCAACCTCGTGAAGCTCCATGGCTACTGCAGCGATCCCAGAGGGCTTCTCCTTGTCTACGATTACGTCCCGAACGGGACACTAGCGGATCACCTCCACGGCCGGAGAAGAGGGTCGCCGCTGACGTGGCAGACGAGGCTTGACATTGCTCTGCAAACCGCTCTGGCGATGGAGTACCTTCATTTCTCGGTGGTGCCGCCGATAGTGCATAGAGACATCACTTCCTCCAACATCTTCGTTGAATCGGACATGAGAATCAAGGTGGGTGACTTCGGACTCTCGAGATTGCTGGCGTTGAAGCAGCATGACAATACGACGACGTGTTCCGGCGGGTTTGTTTGGACCGGGCCGCAAGGTACACCCGGGTATTTAGACCCGGATTACCATCGGTCTTTCCGGTTAACCGAGAAGAGCGACGTGTACAGCTTCGGGGTGGTGTTGTTAGAGCTCATCTCAGGGCTCAGGGCGGTGGATCAAACCAGGGACAGGCGCGAAATGGCGCTCGCTGATATGGTAGTGTCAAGAATCCACACCGGGCAGCTCCGGCAGGTTCTCGACCCGGTTCTGAAACTGGACCGCGACGGCGCCTCCGCTTTTGATTCTGTGGCCTCCGTGGCGGAGCTGGCGTTCAGATGTGTCTTGCCGGATAAGGATGACCGGCCTGATTCCAAGGAGGTGGTGGAGGAGCTGAAGCGGGTTCGGAGCAAGGCTCGCGGAGGAGGAGGGTCAAGGTCGTCAGCGAGTTGCGACGGCGGAGATGACGTGGCTAAGGGCTGA 1908 0.5545 MTNPSTFPTILSFILLLFFPTSNSIHTHTDTCSSITHPCPPFPHHLPYPFSTSPGCGHPSFHINCSSPHSHISINNLTFSILSYNSSSLFLSPHHSNNTCPSSHFLSIPNKPINLSHSPFTVSDASCSRLSFLQPCSPPTLPNCSHCPWECKVIKSPGEILPDCRSTHHSASDSGTCQSDVLGYLNKMLLEDGIEVEWDESQDPYFSSCRECRINGGFCGFNSSDPDKHFLCFGSKSSLSQLWIQNVGKPNRRTVLCLVIAFTSLLLLTLVAITILRSRSLKPSPETEEDPTTIFLHNHRSASLLPPVFTYDELDTSTNHFDPKRKIGDGGFGSVYLGHLFDGRLAAVKHLHRQHHPAAFSTKSFCNEILILSSIDHPNLVKLHGYCSDPRGLLLVYDYVPNGTLADHLHGRRRGSPLTWQTRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVESDMRIKVGDFGLSRLLALKQHDNTTTCSGGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLRAVDQTRDRREMALADMVVSRIHTGQLRQVLDPVLKLDRDGASAFDSVASVAELAFRCVLPDKDDRPDSKEVVEELKRVRSKARGGGGSRSSASCDGGDDVAKG* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1082 635 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 28 617 - -
Lja2g1082 635 Pfam Protein tyrosine and serine/threonine kinase 324 606 IPR001245 GO:0004672|GO:0006468
Lja2g1082 635 MobiDBLite consensus disorder prediction 594 635 - -
Lja2g1082 635 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Lja2g1082 635 ProSitePatterns Tyrosine protein kinases specific active-site signature. 445 457 IPR008266 GO:0004672|GO:0006468
Lja2g1082 635 Gene3D Phosphorylase Kinase; domain 1 297 399 - -
Lja2g1082 635 ProSiteProfiles Protein kinase domain profile. 321 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1082 635 Gene3D Transferase(Phosphotransferase) domain 1 400 620 - -
Lja2g1082 635 CDD STKc_IRAK 327 609 - -
Lja2g1082 635 SUPERFAMILY Protein kinase-like (PK-like) 302 607 IPR011009 -
Lja2g1082 635 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 617 IPR045274 GO:0007166
Lja2g1082 635 MobiDBLite consensus disorder prediction 594 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1082 Lja-Chr2 10300477 10303514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1082 39 634 Receptor kinase-like Gene Family AT1G69910 61.564 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja2g1082 PK_Tyr_Ser-Thr 8.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1082 - - cam:101489033 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1082 2 10300477 10303514 Lja2g1082 2 10300477 10303514 ECH