Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1073 ATGGATCCGGCAGCGATGATGAACGGAGGCGCCAACACGGCGTCGTATCACCTGGCGGAGATCTGGCAGTTTCCGCATCCGGTTGCTGGTGATTCCGGCGGCGGGTTGGGGCTGAGAAGGCCGCAGTTCGGACACGGGTTTGGTGATTTTACTACGTGTCCGACCCGGGAGGATCCGGGTTCTGACCCGGTTAGTTCGGATCACAGGCAAGCTTTAACGGTGAGCCTTGGCCGGAAGCGGCGCGACTCCGAGGAGGAATCTGTTAAGGGTGTCTCCACCAGCAATGGCGGTGGCAATGGCGTGAATGATGGTGGTGGTGATGGGAAGAGGATGAAGATATCAGGGAACAGGAATGAGAGCAGTAAAGGAGGAGAAGCAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAACTAGTAAGGCACCACCTGAGCCTCCTAAGCAAGACTATATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGTCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTTCCTGGTTGTAATAAGGTTATCGGGAAAGCATTGGTCCTCGATGAGATAATCAATTATATTCAATCACTTCAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGACCCCTGGCATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAGCCGCCATGCCGTTCCCTTCACAAGCTACCAGAGAGTATAGCCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTTGGAGGTGGTTTTGAAAGAGCAACGTAG 840 0.5048 MDPAAMMNGGANTASYHLAEIWQFPHPVAGDSGGGLGLRRPQFGHGFGDFTTCPTREDPGSDPVSSDHRQALTVSLGRKRRDSEEESVKGVSTSNGGGNGVNDGGGDGKRMKISGNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDFDQQTFDTAAMPFPSQATREYSRGSSPEWLHMQVGGGFERAT* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1073 279 Gene3D - 155 228 IPR036638 GO:0046983
Lja2g1073 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Lja2g1073 279 MobiDBLite consensus disorder prediction 117 136 - -
Lja2g1073 279 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Lja2g1073 279 CDD bHLH_AtBPE_like 148 233 - -
Lja2g1073 279 PANTHER BNAC05G07950D PROTEIN 1 279 - -
Lja2g1073 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 226 IPR036638 GO:0046983
Lja2g1073 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 279 IPR024097 GO:0006355
Lja2g1073 279 Coils Coil 205 225 - -
Lja2g1073 279 SMART finulus 164 214 IPR011598 GO:0046983
Lja2g1073 279 MobiDBLite consensus disorder prediction 73 88 - -
Lja2g1073 279 MobiDBLite consensus disorder prediction 32 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1073 Lja-Chr2 10232113 10235483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1073 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 57.377 4.32e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1073 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1073 - - lja:Lj2g3v1351570.1 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1073 2 10232113 10235483 Lja2g1073 2 10232113 10235483 ECH
Lja2g1073 2 10232113 10235483 Lja2g1073 2 10232113 10235483 PCT