Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1071 ATGCCCACCACATCAAAAACACCAACCATTCATCAACAAAGAAGCATTGCAATGACGCCGGAAACTGACGCCACATCATCGTCGCAGCCGCCGCCAGCTTCTTTCAGGTTCAAGTGGGACGTGTTCCTGAGCTTCAGGGGCACTGACACGCGCCACACCTTCACGAATGACCTCTACAACGCGCTCCACGCCCGCGGTGTTCGTGTCTTCCGCGACGACGACGGGTTGGGCCGCGGCGACGAGATAAACGCGAGCCTTCTGGAGGCCATTGATGACTCTGCGGCTTCTGTCATCGTTCTCTCGGAGGACTATGCCTCCTCTCGGTGGTGCCTGGAGGAGTTGGCCAAGATTTGCGACTGTGGGAGGTTAATCCTGCCCGTTTTCTACCGGGTTGACCCGTCGGATGTCCGAAAACAAAAGGGTCCCTTTGAAGAGTCTTTCATGTCCCATGCAGTGAGGTTTGAGGCAGAGCCAGAGAAGGTTCAGCTCTGGAGGGATGCTATGGCAAAAGTGGGTGGAATCGCTGGTTGGGTTTGCCATGAAAACAGTGACAGTGATAAGCTGATTCGAGTTTTGGTGGAAACAGTTATGAAGCAGATGAAGAACACTCCACTGAGTGTGGCTCAGTACACAGTGGGGGTTGATGATAAAGTGGAAGAGTTAAAAAAGTTGCTTGATGTGAAAATCAATGATGTGAGGGTTCTGGGGTTGTATGGGATGGGTGGTATTGGTAAGACAACTCTGGCCAAGAGCCTCTTCAACAACCTTGTAGTTCATTTTGAACGTCGCAGCTTCATTTCAAATGTCAGATCAGAAGTTAATTCAAGACATGGCGATGATGGTGGTTTGGTTTCTCTTCAAAACAGAGTTCTTGGTGATCTTTCCTCTGGTGGAACAGGGGATCCCTTCAATGATGTTAATGGTGGTGTTTCTGCTATCAAAAGAGCATTAAATGGAAGCAAAGTTCTGCTAATCTTGGATGATGTTGATGAGGTCAAGCAGCTTGATTTCTTGATGGGCAATAGGGAATGGTTTCATAATGGAAGCCGTATTGTGATAACCACAAGGGATAGACAAGTTTTACCTGAAAGTTATGTTGATATGTTCTATGAGGTGAGGGAATTGGAATTCTCTCCAGCAATGGAATTATTCTGTCACCATGCAATGGGAAGAAAGGAGCCAGGAAAGGATTTTTCGAATCTGTCAAAACAGATTGTAGAAATAACTGGAGGATTGCCCTTGTCTTTGGAAGTTATTGGCTCTCTTCTATCTGATAAGAAGAACAACAAGGAGTGGGAATATGCGGTGGAGAAGCTGAAACAGGATCCTCATCCAGGTGTTCAGGATGTGTTGAAGATCAGTTATGATGCATTGGATAAACAAGAGCAGTGCATTTTCCTTGACATTGCTTGTTTGTTTGTGCAAATGGAAATGGAAAGAGATGATATGGTTGATATATTGAATGGGTGCAATTTCAATGGAGGGATAGCAATGTCAGTCCTTGCTGCAAAATGTTTGATCAAAATCACTACACGTAATGTGGTGTGGATGCATGATCAAGTTAGAGACATGGGAAGACAAATTGTTCAGAATGAAAGCCTTACAGATTATGGTCTGCGTAGCAGGCTATGGGATCGAGATCAGATATTGACTGTTTTGATGAGTAAGAAGGGAACAAGAAGTATTCAAGGGATCGTCCTAGATTGTGTGAAGAGAAACCATTTACCTAGAGATCGGTCTGCGGCTGAAATTACATGGGATCACTTTCATCAAAAGCCCAGTTTTAAATCTGCATCAGCATTTATCAAAGAGAAGTGTAAAAAGTATATGCAGGACAGAGAAGAGAAAGCAAAAGAGGTTGTCCTTCAGACAGACCACTTTCAACCAATGGTTTCCCTAAGATTGCTTCAAATTAATTATTCAAGATTGGAAGGACAATTTAGATGTCTGCCTCCAGGACTAAAGTGGTTGCAGTGGAAACAATGTCCATTAAGGAATTTTCCTTCAGGTTATAATCCTTTGGAGCTTGCTGTGATTGACCTCTCAGAAAGTAAAATTGAAACATTGTGGGGCAGGCGCAGTAACAAGGTGGCTAAGAACTTGATGATTTTAAAGCTCTCAAAATGCCACAAATTAGCTGTAATTCCGGATTTAGCTGATTATCTATGTCTGAGGAAAATTGTTTTGGAGGAATGCTCTCATTTAACTAGGATTCATGAATCACTTGGAAATCTAAGTACCTTGGTTCACTTGAACTTTCATCAGTGCAATAACCTTATCGAATTACCTGCTGATGTCTCCGGGCTGAAACATCTCGAGGACCTTATCCTTTCTGGCTGCAGGAAATTGAAAGCATTGCCGATAAGCATAAGCTGCATGGTTTCCTTAAGGCAACTTGTTCTTGATGAAACTGCTATAACTGAGCTACCTGAATCCATCTTCCACCTGACAAAACTTAAAAAGTTGAGTGCAAATTCATGTCAATTGAAGAGGTTACCTTCCTGCATTGGGAAACTGTGCTCACTGGAGGAATTGTCTCTCAACCACAATAAAGCATTGGCTGAATTGCCTGATTCTGTTGGTTGTTTGGAGAATCTTGAGCTGCTTAGTTTGGTGGGGTGCAAGTCACTCTCTGTGATTCCTAACTCTGTTGAGAAACTAATTTTATTGAAAAGGTTACATCTTAATGTCAGTGGAATTGAAGAGTTGCCTGATTCTATTGGTTCTTTATCATATTTAAGGGAACTCTCTGTTGGAGGCTGTATTTCTCTTCACAAGTTGCCTGTGTCAATAGAAGCTTTAGTTTGTATTGCTGAGCTTCGGTTAGATGGGACACCAATTACCAATTTGCCAGACCAAATTATGGGCATGAAAATGCTTAAAAAGCTTGACATGGGAAATTGTAAGCACCTAACATGTCTACCACCATCAATCGGCCTCCTATCAGCTCTCACAACTTTGGACATGTACAACACTAACATCACTGAATTGCCAGAGTCAATAGGAATGTTGGAAAACCTTACCCGGTTGAGATTAGACATGTGTAGACAGCTCCATAGGCTTCCAAATTCCATGGGAGGATTGAAATCTTTGCAATGGTTAATGATGAAAGGAACAGCAGTTACTCATCTACCTGATAGCTTTGGAATGCTTTCAAGCCTGGTAGAACTACAAATGGAAAGAAGGCCTTATCTAAACAACATGCCTACAACAGACATAATTGCTAACGAGCAGGAGGAACCTAATTCAGAGTCAATCTTAACCTCTTTCTGCAACCTCACTATGCTGGAACACCTAAATTTTCATGGATGGAGAATAATTGGAAAAATTCCAGACGATTTTGAAAAGATATCTTCACTGGAAACTTTAAGTTTAGGCCACAACAATATTTGCAAGCTTCCAGCAAGCATGACAGGCCTCTCCTATCTCAAAAAGCTTTATTTGGAAGATTGCAGGGAGCTCATGTTTCTGCCTCCTCTTCCCTCTAGCTTGGAGGAGCTTAACATTGCAAACTGCACAGCAGTAGAGTACATATCTGATATTTCAAACTTGGACAGGTTAGAGGAGTTCAACCTCACAAATTGTGAAAAAGTGAAGGATATTCCAGGTCTTGAACACTTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGCATTGGATGTTCCCTTGCTGTGAAGAGAAGATTTTCCAAGGTTCTACTTAAAAAATTAGAGATTTTGATTATGCCTGGAAGCAGAGTTCCAGACTGGTTCTCAGGGGAATCAGTTGTGTTTTCAAAGCAAAGAAACCGTGAGCTTAAAGGTATTATTTGTGCTGGTGTGCTTTCTTTCAACAAAATACCAGAAGACCAAAGAGATAAACTGCAGTTAGTGGATGTTCAAGGAAAAGTCTTCAATTTGACTGACAATGTTTACAGCACAACGTTTCGCCTTCTAGGAGTACCTAGGACAAACGAACACCACATCTTTTTGCGCAGATTTGGAGTTCATACTTCCTTAGTCCATCAGTTAAAAGATAAGTATACCTTACATTTGACAAAGCGAAACCCGCCTTATGTTGAGGGGCTGAAGCTGAAAGACTGTGGAGTAAATTTAGTGTTTGAAGGTGATGATGATTATGAGGGAGATGAAGAATCACTGGAAGAAGGACAATATTCTGTTTCACAAAAATTAGCTAAGTTCTTCAACACTACTGCAGAAGATAACCCTGACCCTTGTGCGGAAGATAACCCTGACCCTTGTGTAGGGGCGGAGGGATCGGGGTGGCTCACCGGTGCCGCCACGCCCCTCATCTTTTTTACTTTCATTTGGATACTATGTATATTTTTCTTTTGGCCCCTGTGGTAA 4347 0.4242 MPTTSKTPTIHQQRSIAMTPETDATSSSQPPPASFRFKWDVFLSFRGTDTRHTFTNDLYNALHARGVRVFRDDDGLGRGDEINASLLEAIDDSAASVIVLSEDYASSRWCLEELAKICDCGRLILPVFYRVDPSDVRKQKGPFEESFMSHAVRFEAEPEKVQLWRDAMAKVGGIAGWVCHENSDSDKLIRVLVETVMKQMKNTPLSVAQYTVGVDDKVEELKKLLDVKINDVRVLGLYGMGGIGKTTLAKSLFNNLVVHFERRSFISNVRSEVNSRHGDDGGLVSLQNRVLGDLSSGGTGDPFNDVNGGVSAIKRALNGSKVLLILDDVDEVKQLDFLMGNREWFHNGSRIVITTRDRQVLPESYVDMFYEVRELEFSPAMELFCHHAMGRKEPGKDFSNLSKQIVEITGGLPLSLEVIGSLLSDKKNNKEWEYAVEKLKQDPHPGVQDVLKISYDALDKQEQCIFLDIACLFVQMEMERDDMVDILNGCNFNGGIAMSVLAAKCLIKITTRNVVWMHDQVRDMGRQIVQNESLTDYGLRSRLWDRDQILTVLMSKKGTRSIQGIVLDCVKRNHLPRDRSAAEITWDHFHQKPSFKSASAFIKEKCKKYMQDREEKAKEVVLQTDHFQPMVSLRLLQINYSRLEGQFRCLPPGLKWLQWKQCPLRNFPSGYNPLELAVIDLSESKIETLWGRRSNKVAKNLMILKLSKCHKLAVIPDLADYLCLRKIVLEECSHLTRIHESLGNLSTLVHLNFHQCNNLIELPADVSGLKHLEDLILSGCRKLKALPISISCMVSLRQLVLDETAITELPESIFHLTKLKKLSANSCQLKRLPSCIGKLCSLEELSLNHNKALAELPDSVGCLENLELLSLVGCKSLSVIPNSVEKLILLKRLHLNVSGIEELPDSIGSLSYLRELSVGGCISLHKLPVSIEALVCIAELRLDGTPITNLPDQIMGMKMLKKLDMGNCKHLTCLPPSIGLLSALTTLDMYNTNITELPESIGMLENLTRLRLDMCRQLHRLPNSMGGLKSLQWLMMKGTAVTHLPDSFGMLSSLVELQMERRPYLNNMPTTDIIANEQEEPNSESILTSFCNLTMLEHLNFHGWRIIGKIPDDFEKISSLETLSLGHNNICKLPASMTGLSYLKKLYLEDCRELMFLPPLPSSLEELNIANCTAVEYISDISNLDRLEEFNLTNCEKVKDIPGLEHLKSLRRLYMSGCIGCSLAVKRRFSKVLLKKLEILIMPGSRVPDWFSGESVVFSKQRNRELKGIICAGVLSFNKIPEDQRDKLQLVDVQGKVFNLTDNVYSTTFRLLGVPRTNEHHIFLRRFGVHTSLVHQLKDKYTLHLTKRNPPYVEGLKLKDCGVNLVFEGDDDYEGDEESLEEGQYSVSQKLAKFFNTTAEDNPDPCAEDNPDPCVGAEGSGWLTGAATPLIFFTFIWILCIFFFWPLW* 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1071 1448 Gene3D - 375 459 IPR042197 -
Lja2g1071 1448 Gene3D - 3 171 IPR035897 -
Lja2g1071 1448 Gene3D - 186 366 IPR027417 -
Lja2g1071 1448 SMART LRR_typ_2 887 910 IPR003591 -
Lja2g1071 1448 SMART LRR_typ_2 1028 1050 IPR003591 -
Lja2g1071 1448 SMART LRR_typ_2 793 816 IPR003591 -
Lja2g1071 1448 SMART LRR_typ_2 981 1004 IPR003591 -
Lja2g1071 1448 SMART LRR_typ_2 1117 1140 IPR003591 -
Lja2g1071 1448 SMART LRR_typ_2 839 863 IPR003591 -
Lja2g1071 1448 ProSiteProfiles TIR domain profile. 37 200 IPR000157 GO:0007165
Lja2g1071 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 469 IPR027417 -
Lja2g1071 1448 SMART till_3 38 174 IPR000157 GO:0007165
Lja2g1071 1448 SUPERFAMILY L domain-like 924 1244 - -
Lja2g1071 1448 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 177 IPR035897 -
Lja2g1071 1448 Pfam TIR domain 38 206 IPR000157 GO:0007165
Lja2g1071 1448 PRINTS Disease resistance protein signature 409 423 - -
Lja2g1071 1448 PRINTS Disease resistance protein signature 316 330 - -
Lja2g1071 1448 PRINTS Disease resistance protein signature 234 249 - -
Lja2g1071 1448 PRINTS Disease resistance protein signature 955 971 - -
Lja2g1071 1448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 1356 IPR044974 GO:0006952
Lja2g1071 1448 PANTHER TMV RESISTANCE PROTEIN N-LIKE 36 1356 - -
Lja2g1071 1448 Gene3D Ribonuclease Inhibitor 619 737 IPR032675 -
Lja2g1071 1448 MobiDBLite consensus disorder prediction 1 31 - -
Lja2g1071 1448 SUPERFAMILY L domain-like 516 951 - -
Lja2g1071 1448 Gene3D Ribonuclease Inhibitor 1078 1225 IPR032675 -
Lja2g1071 1448 Gene3D Ribonuclease Inhibitor 894 1077 IPR032675 -
Lja2g1071 1448 Gene3D Ribonuclease Inhibitor 738 893 IPR032675 -
Lja2g1071 1448 CDD AAA 237 357 - -
Lja2g1071 1448 ProSiteProfiles Leucine-rich repeat profile. 1119 1140 IPR001611 GO:0005515
Lja2g1071 1448 Pfam NB-ARC domain 215 458 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1071 Lja-Chr2 10215833 10222858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1071 31 916 WRKY Transcription Factor Family AT4G12020 28.366 8.64e-78 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1071 - - gmx:100784137 1977.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1071 2 10215833 10222858 Lja2g1071 2 10215833 10222858 ECH
Lja2g1069 2 10190565 10197090 Lja2g1071 2 10215833 10222858 PCT