Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1064 ATGATGATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCCCGCACATGCACCGACACCGCCGCCGCTGGAGACAACGGCATCATGCTCTTCGGCGTGCGCCTCACCGAAGGCTCCACCTCCTCCTCCGCCTTCATCAGGAAGAGCGCTAGCATGAACAACCTCTCCCAGTATAACGAACCCGAATCCAACCCCGCTGACGCAGCTGGCTACGCCTCCGACGACGTCGTTCATCCCTCCGCACGCGCCCGCGACCGCAAGCGAGGTGTGCCTTGGACGGAAGAAGAACACAAACTGTTTCTGTTGGGATTGCATAAAGTGGGGAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGCACACCCACTCAGGTTGCTAGTCATGCTCAGAAGTATTTCCTCCGCCGTCACAACCATAACCGCCGGCGCCGGAGATCTAGCCTTTTCGACATCACCACCGATACGGTGATGGAATCTTCAACAATAATGGAGGAAGAACAAGATCAGCAAGAAATGGTGCCGCCAGCTACCTCCGCCGTGTATCCGCCGTTACATTACGGTGGCTTCCACGGCCCAGCGTTTCCAATGGCTCTGTCTCCGGTGGTATTGCCGGTGGCCGGAGGGGAAAGACCGGCAAGGCCGATTAGGCCAACGCCGATTTTCCCTGTGCCTCCGTCTTCTAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCAGCTTCTCCTTCCCCTTCTTCTCCATTTGAGCCTCTACCGCTGTCGCTGAAGCTGCAGCCATCTCCGCCGCCGTCCAAGGATCATTCTCCGGCAACCAGTAGCCACTCGTCGCCATCATCGCCGTCTTCTTCATCATCTTTTCAGGCTATGTCTGCAGGGAAGTTCAGCGGTGGTGGAGATAGCATTATTAGTGTTGCTTGA 933 0.5573 MMMSRTCSQCGNNGHNSRTCTDTAAAGDNGIMLFGVRLTEGSTSSSAFIRKSASMNNLSQYNEPESNPADAAGYASDDVVHPSARARDRKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNHNRRRRRSSLFDITTDTVMESSTIMEEEQDQQEMVPPATSAVYPPLHYGGFHGPAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSKDHSPATSSHSSPSSPSSSSSFQAMSAGKFSGGGDSIISVA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1064 310 Gene3D - 93 144 - -
Lja2g1064 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Lja2g1064 310 MobiDBLite consensus disorder prediction 250 271 - -
Lja2g1064 310 MobiDBLite consensus disorder prediction 239 310 - -
Lja2g1064 310 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Lja2g1064 310 MobiDBLite consensus disorder prediction 59 92 - -
Lja2g1064 310 SUPERFAMILY Homeodomain-like 89 142 IPR009057 -
Lja2g1064 310 SMART sant 91 141 IPR001005 -
Lja2g1064 310 MobiDBLite consensus disorder prediction 272 296 - -
Lja2g1064 310 CDD SANT 94 139 IPR001005 -
Lja2g1064 310 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Lja2g1064 310 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 10 307 - -
Lja2g1064 310 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Lja2g1064 310 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Lja2g1064 310 PANTHER TRANSCRIPTION FACTOR KUA1 10 307 - -
Lja2g1064 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1064 Lja-Chr2 10098639 10100703 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g1064 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1064 - - gmx:780554 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1064 2 10098639 10100703 Lja2g1064 2 10098639 10100703 ECH