Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1062 ATGCCGTCTCACGCGGATCTGGACCGGCAGATCGAGCACCTCATGGAGTGCAAGCCTCTGCCGGAGGCGGAGGTCAAGGCTCTGTGCGACCAGGCGAGGACGATTCTGGTCGAGGAGTGGAACGTTCAGCCGGTGAAGTGTCCTGTCACGGTGTGTGGTGATATTCATGGCCAGTTCTACGATCTCATCGAGCTTTTTCGGATAGGAGGAAGTGCACCTGATACCAATTATCTCTTCATGGGCGATTATGTAGATCGTGGGTATTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTACGCTACAGAGATAGAATTACAATTCTCAGGGGCAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTACCTTTGACTGCCCTCATCGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCTCCGTCTTTGGATACATTAGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGATCCTGATGATCGTTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGGTCAGTTCAACCATACCAATGGTCTCTCCCTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGGTACAATTGGTGCCAGGAGAAGAATGTGGTAACTGTTTTTAGCGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTGGAAATTGGAGAGAATATGGAACAGAATTTTCTGCAGTTTGATCCAGCTCCCAGGCAAATTGAGCCTGACACTACACGAAAGACTCCGGATTATTTTTTGTAA 921 0.4658 MPSHADLDRQIEHLMECKPLPEAEVKALCDQARTILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAGQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTPDYFL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1062 306 Gene3D - 2 306 IPR029052 -
Lja2g1062 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 306 - -
Lja2g1062 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Lja2g1062 306 SUPERFAMILY Metallo-dependent phosphatases 6 293 IPR029052 -
Lja2g1062 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Lja2g1062 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Lja2g1062 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
Lja2g1062 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Lja2g1062 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1062 Lja-Chr2 10082113 10086342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1062 49 225 Calmodulin-binding Proteins AT5G63870 36.449 3.59e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1062 K04382 - gmx:100794029 639.032