Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1061 ATGAAGAGGGCTAGATTTGATGTTTACATGAGTTCTTCCACATTCAAACGGCCCATGCTGTCTTCTCGAGGAATCGCAGAAGGGTCGGGGCAACCCCAGATGTTGAATGCAAGTGGTCAGAAACTGACTACCAATGATGCCTTATCATATCTCAAGGCAGTGAAGGATATGTTTGAGGATGACAAGGACAAGTATGATGAGTTTTTGGAGGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACTGCAGGTGTCATAGCAAGAGTGAAGGAACTGTTTGAAGGGCATAGAGATCTGATATTGGGATTTAACACCTTCTTGCCTAAGGGATATGAAATCACGCTTCCACTGGAGGATGAACAACCTCCCGCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAAGCTCGATTTGAAGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAACATGTACAGAAAGGAAAATAAGTGTATCAATGAGGTCTACCATGAGGTTGCAGTACTTTTCCAAGGCCATGCTGATCTTCTTGATGAGTTTACCCATTTTCTTCCGGACGCTTCTGCTGCTGCCTCTAGTTATTATATGTCTGCTCGAAATTCTGTGCTTCGTGATAGGAGATCTGCAATGCCAACAGTGCGGCAAGCGCATGTTGTTAAGAGAGAAAGGACTACGGTTTCACACTGTGATCGTGACCCCAGTGTAGACCGTCCTGACCCAGATCATGACAGAGGTTTGTTGAGGGCAGAAAAGGAGCAGAGGAGACGTGTAGAGAAGGAAAAGGACCATAGAGAAGATGGCAAGAGAGATTGGGAAAGGGATGGCAGAGATCATGAGCATGACGGGGGTCAGTACAGGGAGCGGTTATCCCACAAACGGAAATCTGATCGTAAGGCTGAAGACTTTGGAGCTGAACCATTGCTTGATGCAGATGAATTTTTTGGTACGCGCCCTATGTCATCTACTTGTGATGATAAAAAATCTCTGAAAACAAAGTACCCTGAAGAGTTTGCTTTCTGCGACAAAGTCAAAGAGAAATTACGAAATCCTGACGGCTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAAGGAAATAATCACCCAACAAGAATTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGATCTTATGGAAGAGTTTAACGAGTTTTTGGTACAAGCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGATTGAAGGGCCCGGACTTAAACCAATGAAGGCCGAAGACAGGGATAGGGATCGAGATAGAGACCGCTACAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGACAGATCTACTGTGGTTTCCAACAAGGAGGTCTCAGGTCTTAAGATGTCTGTATATCCCAGCAAGGACAAGCATTTCTTAAAACCTATAAATGAGTTGGACCTTTCCAACTGCGACCGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATAGCTAGCTACAAAAGTAAAATTGGAGCTAAAGTTCTGAATGATCATTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCATTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCAGTAAATTTGACAACCAAACGAGTAGAGGAGCTGTTTGAAAAGATCAATAATAATGTAATTAAAGGAGACAGGCCAGTTCGTATTGATGAGCACTTAACAGCCCTAAATCTTAGGTGTATTGAACGGTTATATGGCGACCATGGGCTTGATGTGATGGAAGTGCTTAGGAAGAATGCACCTTTAGCTTTGCCAGTTATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTCAAGCAACAGGATACAAAAAGATTGAGCACCAAAGCTTTACTGGCAGAAGTCAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAGTAGACAGCCTATTATTCCAAACTTGGAGTTTCATTATCCTGATCTAGACATTCATGAAGATTTGTATCAGCTCGTAAAATATTCATGTGGGGAACTTTGCACAGCTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACTTTTTTAGAACCCATGCTCTGTGTTCCTTCTCGGGCCCAGGGTGCCGAGGATACAGAAGATGTTGTCAAGGCTAAGAATACAGAAGATGTTGTCAATACTGAGAATAATTCTGTCAAAAGTGGCATTGTGAGTGTTGCTGAAAGTGGTGGTAATCCTGGTGTTGGTGCTATCACAATGAACCCAAAGCATATGAGTACTTCTAGAAATGGGAGTGAGTGTATGCCATTAGATCAGTCAGATTCTAAAGCTTGGCAATTAAATGGTGATAGTGGGGTTAGAGAAGATAGATGTCTAGATTCGGACCATACTGTGTATAAAACTGAAACTGCGGGCAATAATACACAACATGGTAAAACGAATATTATTGGATTCACACCCGATGAACTATCAGGGGTCAATAAGCAAAACCAGTCCAGTGAGCGGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGTAATGGAAGGACAAAAATAGATAATACATCAGGACACACTGCTACTCCATCTGGAAATGGTAATACTTCTGTCGAGGGAGGACTTGAATTACCTTCATCAGAGGGTGGTGATTCCACAAGACCAGGTACATTCACAAATGGGGCCACCACTGGAGGCACCGAAGTTCACAGATACCAAGAGCAATCAATTCGACACTTCAAAAGTGAAAGAGAAGAGGGCGAGTTATCTCCAAATGGAGACATGGAAGAGGATAACTTTGCAGTTTATGAAAATTCCGGATTGGATGCAGGGCATAAAGGAAAGGGTGGTGATATGAGTCAAAAATACCAAAGTAGACACGGGGAGCAAGTTTGTTGTGAAGCCAAAGGTGAAAATGATGTGGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGATGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGGGAGGAGTGCTCTCGAGAAGAGCATGAGGACAGGGAACATGATAATAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGTTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTAACAATTTCTGAACGCTTTCTACAAACTGTGAAGCCTTTGGCAAAGTATGTTCCTGCCGCGTTACATGAGAAAGACAGGAATTCTCAAGTTTTTTATGGAAGTGATTCCTTTTATGTTCTGTTCAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGTTTAACTCATCATCTGCCGAAAAGAAATGGAAGGCTTCACATGATACAGGCTCTACTGATCAATATGACAGGTTCATGAACGCCCTTTATAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAAGATGATTGTCGAGCTATTATTGGAACCCAGTCATATCTCTTGTTCACACTAGACAAGCTGATATACAAATTAGTAAAGCAGCTTCAAGCTATAGCCAGTGAGGAGATGGATAATAAACTTCTCCAATTATATGCGTATGAGAAGTCAAGAAAACTAGGAAAGTTTATCGATATAGTTTATCATGAAAATGCATGTGTTATTCTTCATGAAGAGAACATATATCGTATTGAATATTCACCTGGACCAAAGAAACTTTCTATTCAACTGATGGACTGTGGACATGATAAGCCTGAAGTGACAGCTGTGTCAGTCGACCCTAAATTTTCTACCTATCTGCACAATGACTTTCTCTCTGTGGTCCCTGACAAAAAGGAAAAATCACGGCTTTTCTTGAAGAGGAATAAACATAGATATGCCGGTAGTAGTGAATTTTCAAGCCAGGCTATGGAAGGACTACAAGTTTTTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCTTCTAAGGTGTCATATGTTTTAGATACAGAAGACGTCTTGTATCGGAAGAAAAGCAAAAGAAGAATCTTGCACCCGACGAGTTCATGCAATGAGCCGGCGAAGTCTTCAAACATTCGTTCAAGCAGAGCACTGCGGTTCTGCAAATTGTTCTCGAGTACATGA 4323 0.4127 MKRARFDVYMSSSTFKRPMLSSRGIAEGSGQPQMLNASGQKLTTNDALSYLKAVKDMFEDDKDKYDEFLEVMKDFKAQRIDTAGVIARVKELFEGHRDLILGFNTFLPKGYEITLPLEDEQPPAKKPVEFEEAINFVNKIKARFEGDDHVYKSFLDILNMYRKENKCINEVYHEVAVLFQGHADLLDEFTHFLPDASAAASSYYMSARNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVDRPDPDHDRGLLRAEKEQRRRVEKEKDHREDGKRDWERDGRDHEHDGGQYRERLSHKRKSDRKAEDFGAEPLLDADEFFGTRPMSSTCDDKKSLKTKYPEEFAFCDKVKEKLRNPDGYQEFLKCLHIYSKEIITQQELQSLVGDLLGKYPDLMEEFNEFLVQAEKNDGGFLAGVMNKKSLWIEGPGLKPMKAEDRDRDRDRDRYRDDGMKERDRECRERDRSTVVSNKEVSGLKMSVYPSKDKHFLKPINELDLSNCDRCTPSYRLLPKNYPIPIASYKSKIGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNLTTKRVEELFEKINNNVIKGDRPVRIDEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQDEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKRLSTKALLAEVKEISEKKHKEDDVLLAIAAGSRQPIIPNLEFHYPDLDIHEDLYQLVKYSCGELCTAEQLDKVMKVWTTFLEPMLCVPSRAQGAEDTEDVVKAKNTEDVVNTENNSVKSGIVSVAESGGNPGVGAITMNPKHMSTSRNGSECMPLDQSDSKAWQLNGDSGVREDRCLDSDHTVYKTETAGNNTQHGKTNIIGFTPDELSGVNKQNQSSERLVNANVSPASGMEQSNGRTKIDNTSGHTATPSGNGNTSVEGGLELPSSEGGDSTRPGTFTNGATTGGTEVHRYQEQSIRHFKSEREEGELSPNGDMEEDNFAVYENSGLDAGHKGKGGDMSQKYQSRHGEQVCCEAKGENDVDADDEGEESPHRSSDDSENASENVDVSGSESADGEECSREEHEDREHDNKAESEGEAEGMVDAHDVEGDGMSLTISERFLQTVKPLAKYVPAALHEKDRNSQVFYGSDSFYVLFRLHQTLYERIQSAKFNSSSAEKKWKASHDTGSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAIASEEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRIEYSPGPKKLSIQLMDCGHDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFSSQAMEGLQVFNGLECKIACSSSKVSYVLDTEDVLYRKKSKRRILHPTSSCNEPAKSSNIRSSRALRFCKLFSST* 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1061 1440 Pfam Paired amphipathic helix repeat 149 193 IPR003822 GO:0006355
Lja2g1061 1440 Pfam Paired amphipathic helix repeat 362 404 IPR003822 GO:0006355
Lja2g1061 1440 Pfam Paired amphipathic helix repeat 63 107 IPR003822 GO:0006355
Lja2g1061 1440 SMART hdac_interact2seq4b 500 600 IPR013194 -
Lja2g1061 1440 ProSiteProfiles PAH domain profile. 126 196 IPR003822 GO:0006355
Lja2g1061 1440 MobiDBLite consensus disorder prediction 892 1110 - -
Lja2g1061 1440 SUPERFAMILY PAH2 domain 122 195 IPR036600 GO:0006355
Lja2g1061 1440 MobiDBLite consensus disorder prediction 1082 1110 - -
Lja2g1061 1440 Pfam Sin3 family co-repressor 503 593 IPR013194 -
Lja2g1061 1440 MobiDBLite consensus disorder prediction 229 311 - -
Lja2g1061 1440 MobiDBLite consensus disorder prediction 1055 1069 - -
Lja2g1061 1440 ProSiteProfiles PAH domain profile. 338 407 IPR003822 GO:0006355
Lja2g1061 1440 MobiDBLite consensus disorder prediction 433 461 - -
Lja2g1061 1440 PANTHER SIN3B-RELATED 949 1411 IPR039774 GO:0003714
Lja2g1061 1440 SUPERFAMILY PAH2 domain 39 109 IPR036600 GO:0006355
Lja2g1061 1440 Gene3D Paired amphipathic helix 336 408 IPR036600 GO:0006355
Lja2g1061 1440 MobiDBLite consensus disorder prediction 959 980 - -
Lja2g1061 1440 Pfam C-terminal domain of Sin3a protein 1154 1400 IPR031693 -
Lja2g1061 1440 SUPERFAMILY PAH2 domain 336 404 IPR036600 GO:0006355
Lja2g1061 1440 MobiDBLite consensus disorder prediction 981 998 - -
Lja2g1061 1440 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 949 1411 - -
Lja2g1061 1440 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 795 - -
Lja2g1061 1440 ProSiteProfiles PAH domain profile. 40 110 IPR003822 GO:0006355
Lja2g1061 1440 Gene3D Paired amphipathic helix 46 108 IPR036600 GO:0006355
Lja2g1061 1440 PANTHER SIN3B-RELATED 1 795 IPR039774 GO:0003714
Lja2g1061 1440 MobiDBLite consensus disorder prediction 896 951 - -
Lja2g1061 1440 Gene3D Paired amphipathic helix 124 197 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1061 Lja-Chr2 10057551 10070026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1061 31 145 WRKY Transcription Factor Family AT4G12020 49.573 3.48e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g1061 Sin3a_C 1.7e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1061 K11644 - gmx:100811928 2226.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1061 2 10057551 10070026 Lja2g1061 2 10057551 10070026 ECH