Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1054 ATGGAGAACAACGGCGTCGTTTCATTTGATCTCTCACCGGAGCATGCGGCGGCGGAGGTTCATGTCTTGGCCGTCGATGACAGCCTCATTGATCGAAAGGTCATTGAACGCTTGCTCAAGATTTCATCATGTAAAGTTACTGCTGTTGATAGTGGAATCAGAGCACTACAATTTCTTGGACTGGAACCTGAATCTGATGATTTTGCACCATGTTTGAAGGTGGATCTAGTTATCACTGATTACTGCATGCCTGGAATGACTGGTTATGAATTGCTCAAGAAAATCAAGGAATCATCATCTCTCAGAGAAATTCCAGTTGTGATCATGTCTTCTGAGAACGTTTTGCCGCGCATAGACAGATGCATGGAGGAAGGTGCTGAAGATTTCATAGTGAAGCCGGTGAAGTTATCTGATGTGAAACGGTTGAGAGGTTACATGACACCGAAGGAGGTTAAGACGGCGGAGAGTGGAGACAGAGGAGGTGACTGCGGCGGGGGTGGTGGTGGTGGTGGTGTGGGGATCAACAACAAAAGGAAGCTGCAAGAAACATCTGATCCGTCGCCGTCGCCATCACCGCCGTCCATATCCTCATCAGCAGTTTCATCAGCATCGTCACTGTTGGATTCTTCTTCACCGTCATCATCTCCTTCATCTTCACCCCGAGTGCTTGATTCTCCGATCAGACGGCTGAAGATGACCAGCATCGATTGA 711 0.481 MENNGVVSFDLSPEHAAAEVHVLAVDDSLIDRKVIERLLKISSCKVTAVDSGIRALQFLGLEPESDDFAPCLKVDLVITDYCMPGMTGYELLKKIKESSSLREIPVVIMSSENVLPRIDRCMEEGAEDFIVKPVKLSDVKRLRGYMTPKEVKTAESGDRGGDCGGGGGGGGVGINNKRKLQETSDPSPSPSPPSISSSAVSSASSLLDSSSPSSSPSSSPRVLDSPIRRLKMTSID* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1054 236 CDD REC_typeA_ARR 22 142 - -
Lja2g1054 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 234 IPR045279 GO:0009736
Lja2g1054 236 SMART REC_2 20 143 IPR001789 GO:0000160
Lja2g1054 236 MobiDBLite consensus disorder prediction 150 236 - -
Lja2g1054 236 ProSiteProfiles Response regulatory domain profile. 21 147 IPR001789 GO:0000160
Lja2g1054 236 SUPERFAMILY CheY-like 20 141 IPR011006 -
Lja2g1054 236 Gene3D - 20 161 - -
Lja2g1054 236 Pfam Response regulator receiver domain 22 139 IPR001789 GO:0000160
Lja2g1054 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 8 234 - -
Lja2g1054 236 MobiDBLite consensus disorder prediction 194 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1054 Lja-Chr2 10003528 10005149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1054 12 228 Response Regulator Gene Family AT1G59940 58.036 3.84e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g1054 Response_reg 1.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1054 K14492 - gmx:100779833 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1054 2 10003528 10005149 Lja2g1054 2 10003528 10005149 ECH