Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1040 ATGGACAATGATATCTGTGAACTTTCCCATACATGGGATGGTGAGAATGGCAACTCTGTGGAGAAAAGGCTCAGGCTATTTGGCTTTGAGCTAAATCCATCAAAGATTGTCAGAGAATCTGGTGAAGGAGATGAAAGTGTGAACTCCTCCACCTCAGTTTCCTCAGGAGGAGAGAAAACTGTGCAGGAGAAGAGCCCAGATGAGAGGAAATTTGAGTGCCAATTCTGTTTCAAGGAATTTGCAAATTCCCAAGCACTTGGTGGGCACCAAAATGCCCACAAGAAAGAAAGAATGAAGAAGAAAAGGTTGCAGCTCCAAGCAAAGAGGGCCAGTGTAAACTACTACCTTCAGCCTTTTCAAAGCAACAACCATAATGGTTCTGATCATGCTCCTTGGTTCTATGATCCCTCTTCCTATAACAACTCTGAGTTCACCTTGTGTGAAGAATCTCAGATTAGCTTCAATTCAAATGTTCAACCTGCTACCAATTTCTTTGTTGATCAGAAATCTAGTTGGTATAATAATTCTATGCCATCACATGCTTCTTCTTCCCAACAAGATTCTTGCATGTTCACTTTCTCCAATACAGATAATAGCCCTTTCATCTTTAATGAGCCTTGTCACTTCCCTGCTTCAAACCAGAGCCATAGTACAGTTTTAGATCTTCAACTAGGCCTCAATTTGCAATCAAGCTCTTTCAGTAGGCCATGA 711 0.4149 MDNDICELSHTWDGENGNSVEKRLRLFGFELNPSKIVRESGEGDESVNSSTSVSSGGEKTVQEKSPDERKFECQFCFKEFANSQALGGHQNAHKKERMKKKRLQLQAKRASVNYYLQPFQSNNHNGSDHAPWFYDPSSYNNSEFTLCEESQISFNSNVQPATNFFVDQKSSWYNNSMPSHASSSQQDSCMFTFSNTDNSPFIFNEPCHFPASNQSHSTVLDLQLGLNLQSSSFSRP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1040 236 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lja2g1040 236 Gene3D Classic Zinc Finger 47 127 - -
Lja2g1040 236 PANTHER ZINC FINGER PROTEIN 5 17 229 IPR044299 GO:0010090
Lja2g1040 236 MobiDBLite consensus disorder prediction 37 66 - -
Lja2g1040 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Lja2g1040 236 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Lja2g1040 236 MobiDBLite consensus disorder prediction 43 60 - -
Lja2g1040 236 PANTHER ZINC FINGER PROTEIN 5 17 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1040 Lja-Chr2 9790711 9792005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1040 68 114 C2H2 Transcription Factor Family AT1G68360 70.833 1.57e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1040 - - gmx:100527006 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1040 2 9790711 9792005 Lja2g1040 2 9790711 9792005 ECH