Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1002 ATGTTTCCTTTGTTAGGACCTAACATTCCAATCCTTAAACAGAGGACACATAAGGTAGAGAATCCAATCATGCCATTTGGTTTGGTCTCAGCTTGGAACAAACGCCGGAGAAGCAAGTCTCAAGATCATACAGACCCATGGATTTACAAATCTGTACAGCTTTGGCAACTTGAAGATAAAACACCACGACCTGCAAAGAAGCTTCATGGATCATCTGTTTTCACACTCAGGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAAAATTTCCTCGGAAAAGGAGGATTTGGCAAAGTTTACCGAGGCACTTTGCGATCAGGAGAGATTGTAGCAGTCAAGAAAATGGAGCTGCCAGCAATTAAAGAAGCAGAGGGGGAACGTGAGTTCCGAGTCGAAGTCGACATTTTGAGCAGACTCAACCATCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTCTACGAATATATGCTAAATGGGAACCTACAAGATCACTTGAATGGAACTGGGGCAAACCTGGATTGGCCTCAAAGACTACAAGTGGCACTAGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCAAGTTCTAATGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCGACCAATATTCTCTTAAGTGCCAACTTTGAAGCAAAGATATCAGACTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAGGAAACTCATGTGACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACTGGACGTCGAGCAGTAGATCTAAACCAGGGTCCTAATGATCAGAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAACTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTCAGTCTATAGTCATGTTTGCCAATCTAGCATCAAGATGTGTCCGAAGTGAGAGTAATGAGAGACCTTCAATGGAAGATTGTGTAAAAGAACTTCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGATTGATCTAG 1152 0.4184 MFPLLGPNIPILKQRTHKVENPIMPFGLVSAWNKRRRSKSQDHTDPWIYKSVQLWQLEDKTPRPAKKLHGSSVFTLREMEEATCSFSDENFLGKGGFGKVYRGTLRSGEIVAVKKMELPAIKEAEGEREFRVEVDILSRLNHPNLVSLIGYCADGKHRFLVYEYMLNGNLQDHLNGTGANLDWPQRLQVALGAAKGLAYLHSSSNVGIPIVHRDFKSTNILLSANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRSESNERPSMEDCVKELLMIIYTNSKGLGMVMHSLRLI* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1002 383 SUPERFAMILY Protein kinase-like (PK-like) 65 368 IPR011009 -
Lja2g1002 383 PANTHER OS01G0750732 PROTEIN 24 383 - -
Lja2g1002 383 Pfam Protein kinase domain 87 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1002 383 CDD STKc_IRAK 92 362 - -
Lja2g1002 383 ProSiteProfiles Protein kinase domain profile. 86 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1002 383 Gene3D Phosphorylase Kinase; domain 1 52 164 - -
Lja2g1002 383 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 24 383 - -
Lja2g1002 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lja2g1002 383 Gene3D Transferase(Phosphotransferase) domain 1 165 373 - -
Lja2g1002 383 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1002 Lja-Chr2 9447525 9451650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1002 69 366 Receptor kinase-like Gene Family AT3G58690 47.368 2.44e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Lja2g1002 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1002 - - aprc:113868910 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1002 2 9447525 9451650 Lja2g1002 2 9447525 9451650 ECH