Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1000 ATGGTGAGTGAAGGAGTGAGTGTAACAGCAGCAATGGTTGCAACTCAGTTCTTGGAAGTAGGCTTGAACACTCTAGTCAAGTCAGCCACCAACAGTGGAATGAGCAACTATGTTTTCATTGTCTACTCAAACCTTTTGGCTCTCTGTTTCCTTCTACCATCCACCATCCTCTACCACAGGAAGAGAGCTCCTCCACCAATTCCAAGCTCAATTCTCCGCAGAATATTTCTTCTTTCTTGCCTCAGTACTGCAGTGCAGATATTGTTGTACACTGGAATTGGATATAGCTCTCCCACACTGGCCTCAGCTATGGTGGACCTGGTCCCTGCCTTTACCTTCACACTTGCTGTAATTTTCAGGATGGAAAATCTGAACCTAAAACTACATAGCAGCCAGGCGAAAATTGTTGGCACAGTAGTTTCCATTGCAGGGGCACTAATCTTGACTTTATACCAAGGAATGCCACTTATTAGAGGTTCTATGCAAAATTTAGTATTGGGAGGAAGTGGAACTTACCTCTCAGTGCAATCAAATTGGATACTTGGTGGTTTTCTTCTTGCAACTGCTGGCTTTTGCGTTTCAGTTTTGTTTATTGTACAGACTTGGATTATCAGGGAATATCCTGAAGAGCTAGTGGTCACAACCGTTTGTTGCAGCATGGTGGTGGTCCTATCTGCCATAGTTGCTTTAATTGCAGAGGGAACTTCAAAAGCTTGGGTTCTCAGACTTGATAAGGAGTTGGCAGCTGTGTGTTATTCAGCAATTTTTGTGGTGTCGTTGCGGAGTGTTGTGTCTGCATGGGCGTGTCGTAAGAAGGGACCAATTTATGTAGCTATGTTCAGCCCTTTAGGAATGGTAATTGCGGTTGTATTGGGAGTATTACTTCTAGGAGACAGTCTTTATGTGGGAAGCCTGATTGGAGCTATTACAATAGCTGTTGGATTTTATGGTGTGATGTGGGCGCAGGCTCAAGAGGAAAATGTGGTAAATATTGAGAAGATTAAGGATTTCGCCTCATCTTCTTCAGCCCCTCTCATGTCGACCAAAGCCATAGATGTATAG 1062 0.4379 MVSEGVSVTAAMVATQFLEVGLNTLVKSATNSGMSNYVFIVYSNLLALCFLLPSTILYHRKRAPPPIPSSILRRIFLLSCLSTAVQILLYTGIGYSSPTLASAMVDLVPAFTFTLAVIFRMENLNLKLHSSQAKIVGTVVSIAGALILTLYQGMPLIRGSMQNLVLGGSGTYLSVQSNWILGGFLLATAGFCVSVLFIVQTWIIREYPEELVVTTVCCSMVVVLSAIVALIAEGTSKAWVLRLDKELAAVCYSAIFVVSLRSVVSAWACRKKGPIYVAMFSPLGMVIAVVLGVLLLGDSLYVGSLIGAITIAVGFYGVMWAQAQEENVVNIEKIKDFASSSSAPLMSTKAIDV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1000 353 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020|GO:0016021
Lja2g1000 353 Pfam EamA-like transporter family 20 149 IPR000620 GO:0016020|GO:0016021
Lja2g1000 353 PANTHER WAT1-RELATED PROTEIN 16 325 IPR030184 GO:0016021|GO:0022857
Lja2g1000 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 152 - -
Lja2g1000 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 323 - -
Lja2g1000 353 PANTHER WAT1-RELATED PROTEIN 16 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1000 Lja-Chr2 9435996 9438421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1000 10 352 Nodulin-like Gene Family AT5G40240 41.908 4.04e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1000 - - gmx:100793168 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1000 2 9435996 9438421 Lja2g1000 2 9435996 9438421 ECH