Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0995 ATGTTTATGAAAATGCATTTGCTTCACTCTCAAATCCACCAAAGCAATGGTGCTATCACCAATCCTCCAATTTTTTCTCCCTATTCACCTTCTTCTTCTTCCCCTTCATTACCTGACAATTCTAACTACCAGAAACAATCAGCTTCTTCATCTGGGAATAGAATAAGCCCTGCAGTTATTTTCATCATAGTAATTCTAGCTGTTGTGTTTTTCATCTTGGGCTTCCTACACTTGCTAGTTAGATTTCTCTCAAAGCATAGGTCCTCTTCATCAATTTCTGAATCCAACAGATACCCTGAAATCTCTGAATCTGATGCTTACCAGAGACAGTTGCAGAACCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCCCTCCCAGTTTTCTATTACAAAGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCAGTTTGCCTCTGTGAGTTCTTGGAACAGGACAAGCTGAGATTGCTCCCAGTCTGCAACCATGCTTTTCACATAGACTGCATAGACACATGGTTACTGTCCAATTCAACTTGTCCTCTATGCAGAGGGACTCTCTATGCATCTGGATTTTCATTTGAGAATCCTGTGTTTGACTTTGAGGGTCCAAAGGAGGAAGATGGGGTTTCAGTTTCAGGTAGTGGTGGTTCTGTTAACAAGCCTAGTGAGAATCACATAATGAGTGGGAAGAGGGTGTTTTCTGTGAGGCTTGGGAAATTCAGAAGCTCAAATATTGGAGTTAGTGTGGAAAGATGTGAAGGAGAGAGCAGTAATGGTAATTTGGATGCAAGAAGATGCTATTCAATGGGTTCTTTTCAGTATGTTGTTGCTGATTCAGATTTGAGAGTGGCTTTGAGATCCAGTAGAGGTGATGGTAGCATGAGACAACAACTCAAGGGAATAGCAGCCACAAATTTGATGAGTTCTTCAACTGATGGGGATGTTGAGGGTAAAAAAATCAACAATGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGAAAAGTTAACAAGTTTATCAGATACCCATTTTCATAATTCAACTGTGACTGCAACTTTGCCATGGATCAATAAAGCTAGAGGTACATGA 1128 0.406 MFMKMHLLHSQIHQSNGAITNPPIFSPYSPSSSSPSLPDNSNYQKQSASSSGNRISPAVIFIIVILAVVFFILGFLHLLVRFLSKHRSSSSISESNRYPEISESDAYQRQLQNLFHLHDSGLDQAFIDALPVFYYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPVCNHAFHIDCIDTWLLSNSTCPLCRGTLYASGFSFENPVFDFEGPKEEDGVSVSGSGGSVNKPSENHIMSGKRVFSVRLGKFRSSNIGVSVERCEGESSNGNLDARRCYSMGSFQYVVADSDLRVALRSSRGDGSMRQQLKGIAATNLMSSSTDGDVEGKKINNARKGESFSVSKIWQWSRKEKLTSLSDTHFHNSTVTATLPWINKARGT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0995 375 SMART ring_2 147 188 IPR001841 -
Lja2g0995 375 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Lja2g0995 375 CDD RING-H2_PA-TM-RING 146 189 - -
Lja2g0995 375 Pfam Ring finger domain 146 189 IPR001841 -
Lja2g0995 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Lja2g0995 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 369 - -
Lja2g0995 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 369 - -
Lja2g0995 375 MobiDBLite consensus disorder prediction 29 51 - -
Lja2g0995 375 SUPERFAMILY RING/U-box 126 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0995 Lja-Chr2 9382842 9384701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0995 47 348 C3H Transcription Factor Family AT2G18650 41.369 2.72e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0995 - - gmx:100805154 524.242