Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0983 ATGATCCGAAAACTAAACGGGTCGGATCGCCGGGTATTGACATTCCCGGTGGTTTATCCCGGCGAAGACATCGCCATCTCCACCCTCCTCACTTCCCTCATCTCCCTCTCCAACTCCATTTCCACTTTCCAACACACCTTCTTCACCGGCAACAAGCGGAACGCGAGAAATGCCATTCGTTTGACCCAGCTTCTCCAACCTTTCCTCTATGAGATTCGAAACCACAATCCGGATCTTCCCGACCCGGTAGCGCTCTGCTTGTCGGAGCTCCATGTAACCTTCCAGAAGCTTCTCTTCTTGCTGGAAGACTTAACCCGCGAAGGTGCACGGCTGCGGATGCTGATGGAGTCGGAGCGGGTTGCGGCGGAGTTTCGGGTCGTGTCCAGAGCCGTGGCTACAGCTCTGGATATTTTCCCTTTTGGTGCCGTTGAGGTCTCGGAGGAGGCTGAAGAGCAGGTTTTGCTGCTGATGAAGCAGGCGAGGGAGGCCAGATTTGAGGTTGAGCTTGATGATGAGCGTGCTGTGATGGGTGTTATGTCGATTTTGAACCAGTTTGAGAACCGGGTTGCTCCGGATGAGGGTGAACTGAAGCGGGTTATTGAGTATATTGGGGTTTGCAGGTGGAGTGAGTGCAACAGGGAGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGAGGGCTTGAATGAAGAAAAAAAGAGGAAGGTGAGTTTTCTGAGTAGTTTGATGGGGTTTATGAGTTACTGCAGATGTGTGGTAATGGAGGTAGTGGATGGTGAAGAAGGTAACAACAAGAAATCTGATGCAAGCAATGAAAGTGAGATGATCTTGAGTTGTGTTAGCTCAGATGATTTTCTATGTCCAATCTCATTGGAGTTGATGAGAGATCCAGTGACTATAGAAACAGGTCACACCTATGATCGTTCTTCAATTCTCAAATGGTTGAAAAGTGGAAATGCAACATGTCCTAAGACAGGTAAAAGGCTTAGCAGCACTGAGTTAGTACCCAACTTGGTGCTCCGGAGGCTTGTTCAGCAATATTGCTCTGTCAATGGCATTCCTTTTGCTGATTCTGGTCGCCGGAACCGTGACATCACGAGGACGGTGCAGCCGGGAAGTGTGGCGGCAGAGGAAGCTATGAAAATGGTTTCTGGTTTTCTCTGTGGAAGAATTGAAAATGGAAGAGGGGAAGAGAAGAACCGTGCAGCCTTTGAAATGAGGCTTCTTTCCAAAACAAGCATTTTTTGTAGGTCTTGTTTGGTAGAAGCTGGTTCTGTCCCTCTTTTGTTGATTCTGTTGTCATCAAGCGATTCATCAGCACAAGAGAATGCAATTGCAGCACTTCTGAACCTCTCAAAATACTCCAAAAGCAGAGCTCAGATGGTTGAGAATTGGGGATTAGAATTTATTGTAGGAGTTCTAAACAAAGGAGAAAAGATGGAAGCTCGCCAGCACGCTGCAGCTGTGTTGTTCTACCTTGCTTCTTCGAATGCAGAGCACGGGAACAAGATAGGAGAGGAGCCAGAAGCAATTCCATCACTGATCAGGCTCATCGAAGATGGCGCTGATCGAAGCCAAAAGAATGGCTTGGTGGCAATGTTTGGCCTCCTTAAGCACCCTGAAAATGTTAAGAGGGTAATAACAGCTGGAGCAGTTCCTTTGTTAGTTAACATCTTGAAAACATGTGAGAAAGATGACATTATCACAGACTCCTTAGCAATTCTGGCAACAATTGCAGAGAGAAGTGATGGAACAGCAGCAATCCTTAAAATTGGAGCCTTGGATGTTGCTGTTGAAATCTTGAGCTCTTCTTCCGCTTCAAGGATGGGGATGGAGCATTGTGTTTCTTTGTTGCTGTGTTTATCACTGAATGGGGGAGGAGATGTGGTTGCTCATTTAGTGAAGAAAGCTTCTCTTATGGGACCTTTGTATTCTCAACTCAGTGAAGGAACATCGCGAGGAAGCAAGAAGGCTAGTGCTTTGATCAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTCAAGGCTCCAGTGATTCCACGTGAACAATTCATTCATGTGTGGTAA 2070 0.4696 MIRKLNGSDRRVLTFPVVYPGEDIAISTLLTSLISLSNSISTFQHTFFTGNKRNARNAIRLTQLLQPFLYEIRNHNPDLPDPVALCLSELHVTFQKLLFLLEDLTREGARLRMLMESERVAAEFRVVSRAVATALDIFPFGAVEVSEEAEEQVLLLMKQAREARFEVELDDERAVMGVMSILNQFENRVAPDEGELKRVIEYIGVCRWSECNREVKFLEGEIGFEGLNEEKKRKVSFLSSLMGFMSYCRCVVMEVVDGEEGNNKKSDASNESEMILSCVSSDDFLCPISLELMRDPVTIETGHTYDRSSILKWLKSGNATCPKTGKRLSSTELVPNLVLRRLVQQYCSVNGIPFADSGRRNRDITRTVQPGSVAAEEAMKMVSGFLCGRIENGRGEEKNRAAFEMRLLSKTSIFCRSCLVEAGSVPLLLILLSSSDSSAQENAIAALLNLSKYSKSRAQMVENWGLEFIVGVLNKGEKMEARQHAAAVLFYLASSNAEHGNKIGEEPEAIPSLIRLIEDGADRSQKNGLVAMFGLLKHPENVKRVITAGAVPLLVNILKTCEKDDIITDSLAILATIAERSDGTAAILKIGALDVAVEILSSSSASRMGMEHCVSLLLCLSLNGGGDVVAHLVKKASLMGPLYSQLSEGTSRGSKKASALIRVLHDFYERRSSGFKAPVIPREQFIHVW* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0983 689 Pfam U-box domain 282 348 IPR003613 GO:0004842|GO:0016567
Lja2g0983 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
Lja2g0983 689 Gene3D - 386 671 IPR011989 -
Lja2g0983 689 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Lja2g0983 689 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Lja2g0983 689 SUPERFAMILY ARM repeat 392 664 IPR016024 -
Lja2g0983 689 SMART arm_5 453 494 IPR000225 GO:0005515
Lja2g0983 689 SMART arm_5 411 452 IPR000225 GO:0005515
Lja2g0983 689 SMART arm_5 538 579 IPR000225 GO:0005515
Lja2g0983 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Lja2g0983 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 352 IPR013083 -
Lja2g0983 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 592 IPR000225 GO:0005515
Lja2g0983 689 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lja2g0983 689 SUPERFAMILY RING/U-box 281 354 - -
Lja2g0983 689 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Lja2g0983 689 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0983 Lja-Chr2 9239366 9241767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0983 1 689 U-box Gene Family AT1G10560 45.221 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0983 - - gmx:100795816 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0983 2 9239366 9241767 Lja2g0983 2 9239366 9241767 ECH