LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0972	ATGGCTAAGGAAAACTTGACGAAGGAAAATTTGGCTGATGAAATTAGAAAGGCTTTGGCTCCTACGCCATTATCAACATCGCTCCTCGGGGACGCCAATCCTCCGAAAACCTCACCGTCTTCTTCTCCGCCACCGCCACCTTCCCCGTCTCCGCCACAATCTCCACCGCCTGCTCCGCTAACGTCGCCGCCTCCTCTGCAACCTTCCACGCCTCCACCGAGCTCACCTCCTCCTCCTTCTTCGTCATCGCCTCCCCCAACTCCACCATCTTCGCCGCCTACATCATTGCCGCCACCACCTTCCCCAACCGGCAACACTCCCCCTCCATCGCCACAATCACAAACCCCTCCTCCCCCGGCCATTTCTGCTACAAATTCCACTACACCTTCCCCTAGTGCTACTCCTCCGCCGACACCAGCTGGTTCAGGGCCAGGGCCAACCCACCCTCCGCCACCGCACGCTTCCCATTCAAAACCAAGTGATTCTTCTTCTTCTAAAACCCACTCCCACTCCCCCTCACCATCCCCCAGTCATAAAACAGAAGTAGGACAATATGTTGGTCTTGCGGTCGCCGCGGTTGTCCTTATTAGCTTTGTTGCTCTCATACTTTTTCTTGTATTGAGAAAGAAGAACAAACGAGTACATGTCTATGGCATGCCACCCCCTAAGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTGGAGGAGCATGGTTATGTGAATGGTATGCAAGATGGGTATTATAACTCACAACATACGGGTGGCGTGCATCATATGAGAACGCCTTCAGATCCAGCACAGCACATGAACACTGGTCAGATATTATTCGGTTATGACACGATTGTGGAAATTACCAATGGGTTTGCAAGTGAAAATGTGATAGGGGAAGGAGGGTTTGGGTGTGTTTACAAGGCTTCTATGCCGGATGGTAGAGTGGGAGCGGTTAAGCTGTTGAAGGCTGGTAGTGGCCAGGGCGAGAGGGAGTTCAAGGCCGAGGTGGAGATTATTAGCCGTATCCATCATCGACATTTAGTCTCGTTACTTGGTTACTGCGTATCCGAGCAGCAAAGAGTGCTTATCTATGAGTACGTTCCTAACGGGAATCTCAATCAGCACTTGCATGGAAGTGAATGGCCAGTTTTGGATTGGTCTAAGAGGATGAAGATAGCAATTGGGTCTGCAAGAGGCCTGGCATATCTACATGAAGGATGTAATCCAAAGATTATTCATAGAGACATTAAGTCAGCAAACATACTTTTGGATGATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGACTAACAGATGATGCTAATACACATGTATCAACTAGGGTGATGGGGACCTTCGGGTACATGGCTCCAGAGTATGCCACAAGTGGTAAATTAACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTTCTCCTGGAGCTTGTAACTGGAAGGAAACCTGTTGATCCATCGCAGCCTGTGGGCGATGAGAGTTTGGTTGAGTGGGCGCGTCCACTTCTCCTTGCCGCAATTGAGTCAGGTGACTTTGGTGAACTAGTAGACCCAAGGCTTGAACGGCAATACGTTGACAGTGAAATGTTCAGAATGATCGAGGCAGCTGCAGCATGTGTTCGCCATTCTGCCCCTAAAAGACCTAGCATGGTTCAGGTGGCTAGAGCCTTAGACTGCGGAGATCAACTACATGATCTATCTAATGGGGTGAAATATGGTCAGAGCACTATTTATGATTCTGGCCAGTACAATGAAGATATCTTGAGATTCAGAAGGATGGCCAATGGAAGCTTTGATGATTCCGAATTTAGTATGTACAGTACAGACTACAATTCAAGAGAGATGTCTGGACCGAGTCCATGGGTGCCACAAAGCTCAAGTGGCGATTCAGAAACTAGAGCTTTCCACGGCCAAAGGGGAGTTTCTGAGCAAAGATCTTGA	1956	0.4877	MAKENLTKENLADEIRKALAPTPLSTSLLGDANPPKTSPSSSPPPPPSPSPPQSPPPAPLTSPPPLQPSTPPPSSPPPPSSSSPPPTPPSSPPTSLPPPPSPTGNTPPPSPQSQTPPPPAISATNSTTPSPSATPPPTPAGSGPGPTHPPPPHASHSKPSDSSSSKTHSHSPSPSPSHKTEVGQYVGLAVAAVVLISFVALILFLVLRKKNKRVHVYGMPPPKKSQMKGDVHYYVEEHGYVNGMQDGYYNSQHTGGVHHMRTPSDPAQHMNTGQILFGYDTIVEITNGFASENVIGEGGFGCVYKASMPDGRVGAVKLLKAGSGQGEREFKAEVEIISRIHHRHLVSLLGYCVSEQQRVLIYEYVPNGNLNQHLHGSEWPVLDWSKRMKIAIGSARGLAYLHEGCNPKIIHRDIKSANILLDDAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDPSQPVGDESLVEWARPLLLAAIESGDFGELVDPRLERQYVDSEMFRMIEAAAACVRHSAPKRPSMVQVARALDCGDQLHDLSNGVKYGQSTIYDSGQYNEDILRFRRMANGSFDDSEFSMYSTDYNSREMSGPSPWVPQSSSGDSETRAFHGQRGVSEQRS*	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	1	180	-	-
	Lja2g0972	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	409	421	IPR008271	GO:0004672\|GO:0006468
	Lja2g0972	651	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	28	632	-	-
	Lja2g0972	651	PRINTS	Proline rich extensin signature	57	73	-	-
	Lja2g0972	651	PRINTS	Proline rich extensin signature	76	93	-	-
	Lja2g0972	651	PRINTS	Proline rich extensin signature	35	56	-	-
	Lja2g0972	651	CDD	STKc_IRAK	295	563	-	-
	Lja2g0972	651	ProSiteProfiles	Protein kinase domain profile.	289	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	614	651	-	-
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	37	156	-	-
	Lja2g0972	651	Pfam	Protein tyrosine and serine/threonine kinase	292	560	IPR001245	GO:0004672\|GO:0006468
	Lja2g0972	651	SMART	serkin_6	289	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g0972	651	Gene3D	Transferase(Phosphotransferase) domain 1	365	577	-	-
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	157	180	-	-
	Lja2g0972	651	SUPERFAMILY	Protein kinase-like (PK-like)	270	562	IPR011009	-
	Lja2g0972	651	PANTHER	RECEPTOR-LIKE KINASE	28	632	-	-
	Lja2g0972	651	MobiDBLite	consensus disorder prediction	614	640	-	-
	Lja2g0972	651	Gene3D	Phosphorylase Kinase; domain 1	253	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0972	Lja-Chr2	9127249	9131304	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0972	186	619	Trihelix Transcription Factor Family	AT1G70460	60.754	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lja2g0972		PK_Tyr_Ser-Thr	5.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0972	-		-	lja:Lj2g3v1414850.1	977.622