Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0965 ATGTTCGGGGGCAACAATGGAAACCGCTTGCTTCCTGTTTTTCTGGATGAGAATCAATTTCAGTGTCAAACTAATGCGACAAATCAGTTGCAGTTGTTTGGAAATTTGCAAGCTGGACGCAATGTTGATCCAGTTAGTTACATTGGAAATGAGCATATCAGTTCCATGATTCAGCCAAATAAACGAAGCAGGGAAATGGAAGATATCTCGAAGAAGCAAAGGCTTCAGATATCCTTAAACTACAATGTCTGCCAAGATGATGCTGATTGGTCGGCAAGTATTCCAAATCCTAACGCTTTGTCAACAGGATTGAGGCTTTCATATGATGATGATGAGCGAAACTCATCTGTTACTTCTGCTAGTGGCAGCATGACTGCCCCACCTTCTATCATATTGTCCCTTGGTGACAATATCAGAACTGAGCTTGATAGGCAACAAGAAGAGTTGGACCATTATATAAAACTTCAGAAGGAACAATTGTCAAGAGGAGTAAGAGACATGAAACAAAAACACATGGCTTCTCTCCTCACTTCCATTGAGAAAGGTATTGTTAAGAAGCTGAGGGAAAAGGAGGAGGAGATAGAGAACATGAACCGTAAAAATAGGGAGCTAGCAGAGAGAATAAAGCAGGTGGCTGTTGAAGCACAGAACTGGCACTACAGAGCAAAGTATAATGAATCAGTTGTTAATGCATTAAGGAACAATTTGCAGCAAGCAATTTCACATGGGGTTGAACAAGGGAAAGAAGGGTTTGGAGATAGTGAAGTTGATGATGCTGCCTCGTATATAGATCCCAATAACTTCCTAAGCATTCCAGGTGCGCCTATGAAATCTATTCACCCGAGATACCAAGGCATGGAGAATCTTTCTTGCAGAGCTTGCAAAGCAAAGGATGTTTCCATGCTGTTGATACCTTGTAGGCACCTGAGCTTGTGTAAAGACTGTGACGGATTTATCAATGTTTGTCCAGTATGTCAAATGATAAAAACTGCTAGTGTCGAGGTGTATCTGTCTTAA 1017 0.413 MFGGNNGNRLLPVFLDENQFQCQTNATNQLQLFGNLQAGRNVDPVSYIGNEHISSMIQPNKRSREMEDISKKQRLQISLNYNVCQDDADWSASIPNPNALSTGLRLSYDDDERNSSVTSASGSMTAPPSIILSLGDNIRTELDRQQEELDHYIKLQKEQLSRGVRDMKQKHMASLLTSIEKGIVKKLREKEEEIENMNRKNRELAERIKQVAVEAQNWHYRAKYNESVVNALRNNLQQAISHGVEQGKEGFGDSEVDDAASYIDPNNFLSIPGAPMKSIHPRYQGMENLSCRACKAKDVSMLLIPCRHLSLCKDCDGFINVCPVCQMIKTASVEVYLS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0965 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 337 IPR017066 -
Lja2g0965 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 338 IPR013083 -
Lja2g0965 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Lja2g0965 338 Coils Coil 180 214 - -
Lja2g0965 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Lja2g0965 338 Pfam Zinc finger, C3HC4 type (RING finger) 288 326 - -
Lja2g0965 338 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0965 Lja-Chr2 9072148 9076514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0965 287 336 C3H Transcription Factor Family AT1G73950 36.000 3.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0965 K19042 - gmx:100791550 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0965 2 9072148 9076514 Lja2g0965 2 9072148 9076514 ECH