Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0963 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGCTACGTGCAATGTGGATTCTGCACCACCATTTTAATGGTTAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGACACTGCACAAGCCTCCTCTCTGTTAACATGATGAAAGCTTCTTTTGTTCCATTCCACCTTTTAGCATCTCTTACTCATCTTCAGCCAAAAGAAAGTAGTGCAGAAGAAGATGCAAACATGACATTTAACAGCCATAGTGGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATCTGATTCCTATGAGCAATTTTGTGAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTCAAGGCTGAAAATCCTGACATGGCTCACAAAGAAGCTTTCAGTACAGCTGCTAAAAATTGGGCCAATTTCCCTCCAACTCAATGCAAAGGAGATGAAGAGGGAGGTAGCCAGAATGATCAACTTGCGGATCTTGACTCCCATGTGGACCCTCTTGATGATGAGGTCAATGAAGAAGGACAAGGTTTCCGAGGAAGAAAGGTCCCAAGGAACTCTATCTTGGAAAGGACACCGTTTGAGTGA 651 0.4332 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQPKESSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGGSQNDQLADLDSHVDPLDDEVNEEGQGFRGRKVPRNSILERTPFE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0963 216 PANTHER PROTEIN YABBY 6-RELATED 1 178 IPR006780 GO:0007275
Lja2g0963 216 MobiDBLite consensus disorder prediction 158 216 - -
Lja2g0963 216 Gene3D High mobility group box domain 112 174 IPR036910 -
Lja2g0963 216 CDD HMGB-UBF_HMG-box 121 164 - -
Lja2g0963 216 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Lja2g0963 216 PANTHER AXIAL REGULATOR YABBY 4 1 178 - -
Lja2g0963 216 SUPERFAMILY HMG-box 110 163 IPR036910 -
Lja2g0963 216 MobiDBLite consensus disorder prediction 182 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0963 Lja-Chr2 9062832 9065031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0963 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 59.292 2.72e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja2g0963 YABBY 5.2e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0963 K25796 - gmx:100804172 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0963 2 9062832 9065031 Lja2g0963 2 9062832 9065031 ECH