Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0957 ATGGAACATTGTTGTAGCTCAGTTTTCTGGATCCTTGGTTTGCTTCTTCTGGTGTTGATGGAGATATCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTTTGAAGTTGTAGCTCTGATAAAGATAAAGGATGAGTTGAATGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCAGTGGATCCATGCAGCTGGGGCATGATTACTTGTTCTCCAGATGGCTTTGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGGACACTGTCTCCTTGGATTGGAAACCTTACTAACTTACAATATGTTTATCTTCAGAACAATTCCATTTCTGGTCAGATTCCAGCAGCAATTGGAAGCCTAGAAAAGCTTCTGACACTTGATCTCTCCAATAATGCATTTAGTGGTGACATACCTAATTCTTTGGGAGACCTCAAGAACCTGAATTATTTGCGGTTAAATAATAACAGCCTTACAGGAGCCTGCCCTCAGTCTCTTAGCAACATTGGAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAATGGTTCTTTGCCACGAATATCGGCAAGAACGTTAAAGATTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAACAATTGTTCTACTGTTTTACCAGAGCCACTTTCCTTCCCACCAGATGCACTCAGAGCCCAATCAGACTCTGGTAAAAAAAGCTATCATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTTGCTTGGTGGCGATATAGACACAACAAACAGATATTCTTTGATGTTAATGAGCATTACGACCCAGAGGTGCGCCTTGTTGGTCACTTAAAAAGGTTTTCATTCAAAGAACTACGAGCTGCGACAGACCATTTCAACTCAAGGAACATTCTGGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGAGCTTGAATGATGGGTCTGTTGTGGCTGTTAAAAGGTTGAAGGACTATAGTGCAGCAGCTGGTGAGATCCAATTTCAAACAGAAGTCGAGACGATAAGTTTGGCTGTCCACCGGAATCTTCTGAGGCTTAAAGGGTTTTGTAGCACTCAGAATGAAAGGCTCCTCGTTTATCCCTATATGTCTAATGGCAGTGTTGCCTCTAGATTAAAAGATCATATTCATGGTAGGCCAGCTTTAGATTGGACAAGGCGGAAGAGAATAGCTTTAGGTACAGCACGAGGGTTGGTTTATTTGCACGAGCAATGTGACCCTAAAATTATCCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTTTGGATCACAGAGATTCCCATGTGACCACTGCGGTGCGTGGCACCGTTGGTCATATTGCTCCGGAGTACCTGTCTACCGGCCAATCATCGGAAAAGACTGACGTGTTTGGATTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAGGCTCTAGATTTTGGGCGAGAAACAAACCAGAAAGGTGTCATGCTAGATTGGGTTAAGAAGCTCCACCAAGAGGGAAGATTAAGTCAAATGGCAGATAAAGTGCTGAAGGGAAATTTTGACCTTGTTGAATTGGAAGAAATGGTTCAGGTTGCACTCTTGTGTACACAGTTTAATCCTACAACCCGCCCCAAAATGTCTGAAGTATTAAAGATGTTGGAAGGGGATGGCTTAGCTGAGAGATGGGAGGCCTCACAGTCACAGAGGATTGAAACACCAAGGTTCCGGTCTTGTGAAAATCCGCCTCAAAGATACGCAGATTTAATAGAAGAATCATCACTCATAGTAGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1890 0.4312 MEHCCSSVFWILGLLLLVLMEISSAALSPSGINFEVVALIKIKDELNDPHNVLENWDINSVDPCSWGMITCSPDGFVSALGLPSQNLSGTLSPWIGNLTNLQYVYLQNNSISGQIPAAIGSLEKLLTLDLSNNAFSGDIPNSLGDLKNLNYLRLNNNSLTGACPQSLSNIGGLTLVDLSYNNLNGSLPRISARTLKIVGNPLICGPKANNCSTVLPEPLSFPPDALRAQSDSGKKSYHVALAFGASFGAAFVIVIIVGFLAWWRYRHNKQIFFDVNEHYDPEVRLVGHLKRFSFKELRAATDHFNSRNILGRGGFGIVYKASLNDGSVVAVKRLKDYSAAAGEIQFQTEVETISLAVHRNLLRLKGFCSTQNERLLVYPYMSNGSVASRLKDHIHGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRETNQKGVMLDWVKKLHQEGRLSQMADKVLKGNFDLVELEEMVQVALLCTQFNPTTRPKMSEVLKMLEGDGLAERWEASQSQRIETPRFRSCENPPQRYADLIEESSLIVEAMELSGPR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0957 629 PANTHER PROTEIN NSP-INTERACTING KINASE 3 7 629 - -
Lja2g0957 629 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Lja2g0957 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Lja2g0957 629 SMART serkin_6 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0957 629 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Lja2g0957 629 SUPERFAMILY Protein kinase-like (PK-like) 288 587 IPR011009 -
Lja2g0957 629 SUPERFAMILY L domain-like 34 202 - -
Lja2g0957 629 Gene3D Phosphorylase Kinase; domain 1 272 380 - -
Lja2g0957 629 Pfam Protein kinase domain 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0957 629 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Lja2g0957 629 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 629 - -
Lja2g0957 629 ProSiteProfiles Protein kinase domain profile. 304 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0957 629 Gene3D Transferase(Phosphotransferase) domain 1 381 596 - -
Lja2g0957 629 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0957 Lja-Chr2 9008031 9013198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0957 68 629 Receptor kinase-like Gene Family AT1G60800 74.692 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja2g0957 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0957 - - gmx:100784164 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0957 2 9008031 9013198 Lja2g0957 2 9008031 9013198 ECH