Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0954 ATGGACGAAATGTACGGAGTGCCATCCACGGCGGAGTACGCCGACAAGGCGCTGATGCCGCCGGAGAATCTGATCTTCCCTGCAGACTACCACAGCTTCCTCATGTCCTCTTCCACAGCAGACCGGATTCCGATGTTCGGATCCGACGACTTCTTCTCGTCGGCTGAACCCTCCTCCGCCGGAAACCAGGACGACGTGGCTTCCACCGTGATGAAGGCGAAAATCGCCTCTCACCCTCAGTACCCTCGCCTCCTCCAAGCCTACATCGAGTGCCAGAAGGTGGGTGCGCCTCCGGAAATCGCGGGTTTGTTAGAGGAAATCCGGCGAGAAAATGACCTGTGTAAGAGGGACGTAGTTTCCACGTGCTTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAAGCTACTGTGATATGCTGGTGAAGTATAAATCAGACCTGGCTAGGCCTTTTGACGAAGCGAGCAACTTCCTCAACAAGATTGAAATGCAGCTCAGCAATCTCTGTACTGGTGCTTCAGTTCCCACTCTTTCTGATGAGGGGGGTGTATCTTCAGACGAAGAATTCAGTACTGGAGATGGTGATGCTCAAGATGGACAACAATTAAGGGGAGAAGATCGTGAGCTCAAGGATAGGCTTCTACGCAAGTTTGGGAGTCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCCAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAATCTGATAAGATTGAATTGGCTAAGGCAACGGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAACGACATTGGAAACCATCTGAGAACATGCAGTTTTCTATGATGGAACATCTGACCGGACGGTTCCTTTCTGATGAATGA 936 0.4936 MDEMYGVPSTAEYADKALMPPENLIFPADYHSFLMSSSTADRIPMFGSDDFFSSAEPSSAGNQDDVASTVMKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEEIRRENDLCKRDVVSTCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQLSNLCTGASVPTLSDEGGVSSDEEFSTGDGDAQDGQQLRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQINNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0954 311 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Lja2g0954 311 SUPERFAMILY Homeodomain-like 229 301 IPR009057 -
Lja2g0954 311 Pfam KNOX1 domain 71 112 IPR005540 GO:0003677|GO:0005634
Lja2g0954 311 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Lja2g0954 311 MobiDBLite consensus disorder prediction 177 204 - -
Lja2g0954 311 SMART KNOX2_2 119 170 IPR005541 GO:0003677|GO:0005634
Lja2g0954 311 SMART ELK_2 208 229 IPR005539 GO:0003677
Lja2g0954 311 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
Lja2g0954 311 CDD homeodomain 240 292 IPR001356 GO:0003677
Lja2g0954 311 Gene3D - 227 300 - -
Lja2g0954 311 SMART KNOX1_2 69 113 IPR005540 GO:0003677|GO:0005634
Lja2g0954 311 Pfam ELK domain 208 229 IPR005539 GO:0003677
Lja2g0954 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 301 - -
Lja2g0954 311 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Lja2g0954 311 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Lja2g0954 311 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 301 - -
Lja2g0954 311 SMART HOX_1 230 295 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0954 Lja-Chr2 8950775 8957566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0954 1 311 Homeobox Transcription Factor Family AT1G23380 66.364 1.55e-146 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja2g0954 KNOX2 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0954 - - lja:Lj2g3v1415210.1 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0954 2 8950775 8957566 Lja2g0954 2 8950775 8957566 ECH