Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0952 ATGTGCCGACGTGGGTTTCCGTCCACCTTTCACACACTAAGATATAGCCTACCAGAACTAGTGATTCAGATGGGATTGTCCCAAAAAATGAAGAGAGTAGTCTCGCTCATATCTTCTCAGTGCTTTGTGTTCCTTCTACTCAAGTTTTTACTACTATCAGCAACTGTAATGGCAGAACCAAGGGCCAAGACAGTCCAGATAACATGTGCCAAACAATTGGAGCACAACACCACTATCTTTGTTCCTAATTTTGTTTCCACAATGGAGAAGATCAGTGAACAGATGCGCACTGATGGCTTTGGCACGGCAGTCGCGGGGACAGGACCTGATACTAACTATGGCCTTGCCCAGTGCTATGGAGATCTTTCATTACTTGATTGTGTGTTGTGTTATGCTGAGGCACGCACGGTTCTTCCTCAGTGTTTCCCTTACAACGGTGGTCGCATTTACCTTGATGGTTGCTTCATGAGGGCTGAGAACTATAGTTTCTTTAATGAGTATACAGGACCAGGAGACAGAGCTGTGTGTGGGAACACAACTAGGAAGAACTCAACTTTTCAAGCAGCGGCGAAGCAGGCGGTTTTAAGTGCAGTCCAAGACGCACCCAACAATAAAGGCTATGCAAAGGGGGTCGTTGCTGTTTCAGGAACAGCAAATGAATCTGCTTATGTTCTGGCTGATTGTTGGAGGACTTTGGACTCAAGCTCTTGCAAAGCATGTCTTGAGAATGCATCTTCGTCCATATTGGGGTGCTTGCCCTGGTCAGAAGGGCGAGCACTCAACACTGGGTGCTTCATGAGGTACTCGGACACAGATTTTCTTAACAAAGAAGCAGAAAACGGAAGTTCAGGAGGTAATGTAATGGTGATAGTTGTTGCAGTAGTCAGTTCGGTGGTTGTTACGGTGGTAGGAGTCATTATTGGGGCTTATGTCTGGAAACGAAGATACATTCAAAAGAAACGAAGAGGTTCTTATGATCCAGATAAGTTAGCAAAGACTCTTCAGCATAACAGCTTGAACTTCAAGTACTCTACATTGGACAGGGCTACTGGATCTTTTCATGAGAGCAACAAGTTAGGGCAAGGAGGATTTGGAACAGTATATAAAGTATTTCTCTCAAAACCTTTATCTCACCATTTAGCATATCAAAGCCACTCTTACAATTTGCTATTGCAGGGAGTTCTAGCAGATGGAAGAGAGATTGCTATCAAGAGGTTATATTACAATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTAGCGTGGAACACAAGAATCTAGTCAGACTATTAGGATGCAGTTGCTCAGGACCTGAAAGCCTGCTTGTATATGAATTTCTGCCGAACAAAAGTCTCGATGGTTTCATTTTTGACAAAAACAAGGGCAGAGAACTGAACTGGGAAAAGAGATATGAAATTATCACCGGAACAGCTGAAGGATTAGTTTACCTGCATGAGAACTCCAAAGTCAGGATAATTCACAGAGACATAAAAGTCAGCAACATCCTACTGGATGCAAAGCTTCGTGCTAAAATTGCAGATTTTGGTTTGGCTAGGTCCTTTCAAGAAGACAAGAGCCACATAAGTACAGCTATTGCTGGAACTTTGGGGTACATGGCTCCAGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGTAGACGTATATAGTTTTGGTGTGTTACTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAGGAATCAGAGTATACAGACAGCTTAATTTTAGTGGCATGGGAGCATTTTCAGACAGGGACTGCAGAACAATTATTTGATCCAAATATAGAGTTGCATGAGGCCCACAATGGCAATGTTAAGAATGAGATTTTAAGGGTGATTCACATAGGACTTCTATGCATCCAAGAGATCCCTTCATTACGGCCAACTATGTCAAAGGTGTTACAGATGCTAACAAAGAAGGAGGAGCTTCTTGTTGCTCCCTCTAATCCACCCTTCTTAGATGAGAGTACCATGGCACTCCATGACACAAGTGGTGACCCATTGTACCCTCTTAATGCAGATGATTCAATAGCTACTATGGCCCATAGCTCTTTTTATGCCAGGTGA 2109 0.4301 MCRRGFPSTFHTLRYSLPELVIQMGLSQKMKRVVSLISSQCFVFLLLKFLLLSATVMAEPRAKTVQITCAKQLEHNTTIFVPNFVSTMEKISEQMRTDGFGTAVAGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFFNEYTGPGDRAVCGNTTRKNSTFQAAAKQAVLSAVQDAPNNKGYAKGVVAVSGTANESAYVLADCWRTLDSSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEAENGSSGGNVMVIVVAVVSSVVVTVVGVIIGAYVWKRRYIQKKRRGSYDPDKLAKTLQHNSLNFKYSTLDRATGSFHESNKLGQGGFGTVYKVFLSKPLSHHLAYQSHSYNLLLQGVLADGREIAIKRLYYNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDGFIFDKNKGRELNWEKRYEIITGTAEGLVYLHENSKVRIIHRDIKVSNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKVDVYSFGVLLLEIVTGRQNNRSKESEYTDSLILVAWEHFQTGTAEQLFDPNIELHEAHNGNVKNEILRVIHIGLLCIQEIPSLRPTMSKVLQMLTKKEELLVAPSNPPFLDESTMALHDTSGDPLYPLNADDSIATMAHSSFYAR* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0952 702 Pfam Protein tyrosine and serine/threonine kinase 356 650 IPR001245 GO:0004672|GO:0006468
Lja2g0952 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Lja2g0952 702 ProSiteProfiles Gnk2-homologous domain profile. 62 163 IPR002902 -
Lja2g0952 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 392 683 - -
Lja2g0952 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 373 - -
Lja2g0952 702 Gene3D Transferase(Phosphotransferase) domain 1 452 660 - -
Lja2g0952 702 CDD STKc_IRAK 359 653 - -
Lja2g0952 702 SUPERFAMILY Protein kinase-like (PK-like) 337 672 IPR011009 -
Lja2g0952 702 Gene3D - 173 273 IPR038408 -
Lja2g0952 702 Gene3D - 61 163 IPR038408 -
Lja2g0952 702 ProSiteProfiles Protein kinase domain profile. 353 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0952 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 392 683 - -
Lja2g0952 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 37 373 - -
Lja2g0952 702 SMART serkin_6 353 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0952 702 Pfam Salt stress response/antifungal 176 270 IPR002902 -
Lja2g0952 702 Pfam Salt stress response/antifungal 78 161 IPR002902 -
Lja2g0952 702 Gene3D Phosphorylase Kinase; domain 1 315 451 - -
Lja2g0952 702 ProSiteProfiles Gnk2-homologous domain profile. 168 273 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0952 Lja-Chr2 8941086 8945774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0952 46 702 Receptor kinase-like Gene Family AT1G70520 65.961 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g0952 PK_Tyr_Ser-Thr 9.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0952 - - lja:Lj2g3v1415230.1 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0952 2 8941086 8945774 Lja2g0952 2 8941086 8945774 ECH