Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0943 ATGTTTTATGATTTCACAACTATGGCTTCTCTAACTCATCCTCTATGTGTTCTCCTTACTCTAATGGCTGCAGCTTCATTTGCAAGTGTGTTTTCCCTTGAAGTTTCATCCAAAACAACTTACATGGAACCTTTTAACTGCTCTACAAAGATCAGAACATGCAATTCCTTGCTCTACCACATAAGCATCGGTCTCAAGGTCGAAGAAATAGCCCGCTTTTACTCGGTTAATCTCTCCCGAATCAAGCCAATAACTCGCGGTACCAAGCAAGATTACCTTGTCTCAGTGCCTTGTACTTGCAGAAACACCAATGGCCTTAATGGATATTTCTATCATACATCCTACAAGGTTAAGGTTAATGACAGTTTTGTGGATATTCAGAACCTGTTCTATAGTGGACAAGCTTGGCCTGTGAATGAAGATTTGGTGGTTCCAAATGAGACTATGACAATACATATTCCTTGTGGGTGTTCAGAAAGTGGCTCTCAAATTGTCGTCACATACACAGTTCAAAGGAATGATACACCATTATCAATTGCTCTTTTGCTAAATGCTACGGTTGAAGGCATGGTGAGTGTGAACTCAGTTATGGCTCCGAATCCCACATTCATAGATGTTGGTTGGGTGTTATATGTTCCCAAGGAGTTGAATCCAATTTCCCATGGAAAAGAAAATAAACACAAGCTGGAGAAAATTATTGGCATCTTAGCGGGTGTGATATTACTTTCAATTATTACCTTGATCATTCTTATCGTCAGGAGAAATAGATCCTATGAAACCTGCAAAGATGATCCACGCGCTATCTCAAAAAGATCAATCGGCAAAAGAACTAGTTCCTTAATGAACCGCGACTTTCACAAAGAATACATGGAAGATGCGACATCATTTGACTCAGAAAGACCAGTAATTTATACTCTTGAGGAGATTGAACAAGCTACTAATGACTTCGATGAAACTCGAAGGATTGGAGTCGGTGGATATGGAACAGTGTATTTTGGAGTGTTAGGGGAGAAGGAGGTTGCTATAAAGAAGATGAAATCTAACAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTATTAGGATATGCCAGCGGAGATGACCACCTTTACTTGGTGTATGAGTATGTGCCCAATGGATCTCTCAGTGAACATCTTCATGATCCCTTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGATTCAAATTGCACTGGATTCAGCAAAAGGTATTGAATACATACATGATTACACAAAAGCACAGTATGTGCACCGCGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTTGGGCTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTATCTTCCACCAGAATCTCTAAAGGAGCTTCAAGTGACAGTAAAAACTGATGTATTTGCATTTGGGGTGGTTATGTTAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAAGAAGCCAACAATATGAGATCACTTGTTGCAGTTGTTAACCAAATATTTCAAGAAGATAACCCTGAGACTGCTTTAGAAGTTACCGTGGATGGGAATCTACAACGTAGCTATCCTATGGAAGATGTCTACAATATGGCAGAACTATCACACTGGTGCTTGCGCGAAAATCCGGTGGACAGGCCTGAAATGAGTGAGATCGTTGTGAAATTGTCAAAGATTATAATGTCCTCGATAGAGTGGGAAGCATCACTTGGCGGAGACAGCCAAGTCTTCAGCGGGGTATTTGATGGAAGATGA 1863 0.4053 MFYDFTTMASLTHPLCVLLTLMAAASFASVFSLEVSSKTTYMEPFNCSTKIRTCNSLLYHISIGLKVEEIARFYSVNLSRIKPITRGTKQDYLVSVPCTCRNTNGLNGYFYHTSYKVKVNDSFVDIQNLFYSGQAWPVNEDLVVPNETMTIHIPCGCSESGSQIVVTYTVQRNDTPLSIALLLNATVEGMVSVNSVMAPNPTFIDVGWVLYVPKELNPISHGKENKHKLEKIIGILAGVILLSIITLIILIVRRNRSYETCKDDPRAISKRSIGKRTSSLMNRDFHKEYMEDATSFDSERPVIYTLEEIEQATNDFDETRRIGVGGYGTVYFGVLGEKEVAIKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARIQIALDSAKGIEYIHDYTKAQYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESLKELQVTVKTDVFAFGVVMLELITGKRALFRDNQEANNMRSLVAVVNQIFQEDNPETALEVTVDGNLQRSYPMEDVYNMAELSHWCLRENPVDRPEMSEIVVKLSKIIMSSIEWEASLGGDSQVFSGVFDGR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0943 620 Pfam Protein kinase domain 317 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0943 620 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Lja2g0943 620 SMART serkin_6 316 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0943 620 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 26 620 - -
Lja2g0943 620 SUPERFAMILY LysM domain 166 213 IPR036779 -
Lja2g0943 620 Gene3D Phosphorylase Kinase; domain 1 294 387 - -
Lja2g0943 620 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 26 620 IPR044812 GO:0019199|GO:0045087
Lja2g0943 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Lja2g0943 620 Gene3D Transferase(Phosphotransferase) domain 1 388 605 - -
Lja2g0943 620 ProSiteProfiles LysM domain profile. 166 212 IPR018392 -
Lja2g0943 620 ProSiteProfiles Protein kinase domain profile. 316 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0943 620 SUPERFAMILY Protein kinase-like (PK-like) 300 592 IPR011009 -
Lja2g0943 620 Gene3D LysM domain 157 219 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0943 Lja-Chr2 8849457 8854226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0943 296 620 Receptor kinase-like Gene Family AT1G51940 50.755 9.70e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja2g0943 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0943 - - gmx:100800907 931.784