Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0929 ATGGAAGAAGCACTCAGGCTTCTTAACGGTGTGGAACCTGACCAGAAGAAGTGCTCTGCCACCACCAAGAAGACCACTTCACGCGAAAACGGAGGCGGCAGCGGTGGAGTAATGAGGTACCGCGGTGTCCGGCGTAGGCCGTGGGGCCGTTACGCAGCTGAAATCAGGGACCCGCACTCGAAGGAGCGGCGGTGGCTGGGGACGTTTGACACGGCGGAGCAAGCTGCCTGCGCCTACGACTGCGCCGCACGTGCCATGCGCGGTGCCAAAGCTCGCACCAACTTTGTTTACCCAACTTCTCCACCTCCTCCTTCTTCTCCTTCCGCCACCGCTCACCACCTTTTCCCTCCCACCTTCAACTTCCCCAAACAACCCTTCAACAAAACCACCACCGCCGCACACACCCGCCACGTGGCAACTACTTGTTGGCCGGAGCCTCACTCTGTTGACCTTTCACCTTCTTCTTCCATCGACATGCTTCTGTTTCGTGACTTTGTCAACTCTTCTTCTAACCCTTCTCTTGTTGCTTCTTCACCTAAGTATTTTTATGAAGAAATATCTTACAAAAAGGCTAGTAGTTCTTCTGTTCCATCTTGCTCTGATTATGAAGACTCTGAATTTTTCCCTAGAGAGTCTTCTGACTCTGGTTTGTTGGAGGAGGTCGTTCAGAGGTTCTTGCCTAAATCAAAGCCGAAAGTAGAGTCTCTCTGCAACACTGAAACCATGGATGAGATGAAGAAGGGGCTTCCCAAGAAGGAGAGTTTCAGTGACTGTTCTAATCATCACCAAGGTTTCGGAATGCAGCAATTTGACACCCTGAATGGGTATAACACACTGCATGGTATGCCTGTGGGGAGTGCACAACAATTCATGATGAACAATGCAGAGTCTTACTCTATCATGGAAGATGTTTATCAGTACCCGGAGCTTCTCAATGCTTTTGCACTCAGGATGCAGAATGCTTAG 966 0.5062 MEEALRLLNGVEPDQKKCSATTKKTTSRENGGGSGGVMRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAARAMRGAKARTNFVYPTSPPPPSSPSATAHHLFPPTFNFPKQPFNKTTTAAHTRHVATTCWPEPHSVDLSPSSSIDMLLFRDFVNSSSNPSLVASSPKYFYEEISYKKASSSSVPSCSDYEDSEFFPRESSDSGLLEEVVQRFLPKSKPKVESLCNTETMDEMKKGLPKKESFSDCSNHHQGFGMQQFDTLNGYNTLHGMPVGSAQQFMMNNAESYSIMEDVYQYPELLNAFALRMQNA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0929 321 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 198 - -
Lja2g0929 321 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 199 321 - -
Lja2g0929 321 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lja2g0929 321 MobiDBLite consensus disorder prediction 1 41 - -
Lja2g0929 321 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lja2g0929 321 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Lja2g0929 321 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Lja2g0929 321 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 199 321 - -
Lja2g0929 321 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 18 198 - -
Lja2g0929 321 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lja2g0929 321 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lja2g0929 321 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lja2g0929 321 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0929 Lja-Chr2 8761229 8762347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0929 21 230 AP2-EREBP Transcription Factor Family AT1G12980 44.444 1.87e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g0929 AP2 3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0929 - - gmx:102669715 254.218