Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0922 ATGGAGTTTGAAGATCAAGAGGAGCAAGAGGAAGAGCTCTGTATGGCCACAGCACCGAGTTACGACTCACTCACTCACCCTTCCCGAGTTAAGATGCCAGGTGGCGGTGCAGAACCCATCATGGCTCACCCTCTCAGAAACAACAGCAGCAACAACGGCGCCGCCAAGGGGAGATACAGGGAGTGCCTGAAGAACCACGCTGTTGGCATCGGCGGCCACGCACTTGATGGTTGTGGCGAGTTTATGCCGGCGGGGAGTGAAGGCACGCTGGATGCGCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCCGGGAGAATGACTCGTCCAACTCCCCTGGAGACGGTGGACAGTTTCTGCTGACTCACCTCCCCCATGTTCCGCCTCCGCCGCCGCAGTTCCAGGCGTACTATGGCCGGGGTCCGGCGGGGTATTTACATATGTCGGGGCAGCACAGGGTGGGTGCGGGTACGCTGGCGCTGCCGTCGATCTCCGGTGGTGGTGGGCCCCGGGAGGATCAGGAGGATATTTCGAACCTGAGTGCAGGTGGGGGATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGGAACAGAGGGATAAGATGCTGGATTTGGCGGAGAGATTGGGTTGGAGGATGCAGAAGCATGATGAAGGTGTGGTCCAGGATTTCTGTAATGAAACTGGTGTCAAGCGTCATGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 762 0.5709 MEFEDQEEQEEELCMATAPSYDSLTHPSRVKMPGGGAEPIMAHPLRNNSSNNGAAKGRYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLDALKCAACNCHRNFHRRENDSSNSPGDGGQFLLTHLPHVPPPPPQFQAYYGRGPAGYLHMSGQHRVGAGTLALPSISGGGGPREDQEDISNLSAGGGSSKKRFRTKFTQEQRDKMLDLAERLGWRMQKHDEGVVQDFCNETGVKRHVLKVWMHNNKHTLGKKP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0922 253 Gene3D - 176 251 - -
Lja2g0922 253 Pfam ZF-HD protein dimerisation region 58 109 IPR006456 -
Lja2g0922 253 MobiDBLite consensus disorder prediction 163 197 - -
Lja2g0922 253 SUPERFAMILY Homeodomain-like 180 251 IPR009057 -
Lja2g0922 253 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Lja2g0922 253 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 246 IPR006455 -
Lja2g0922 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 46 252 - -
Lja2g0922 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Lja2g0922 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0922 Lja-Chr2 8633917 8635142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0922 1 249 ZF-HD Transcription Factor Family AT4G24660 50.602 3.40e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g0922 ZF-HD_dimer 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0922 - - gmx:100795063 317.39