Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0915 ATGGACACTTCCAGAGGACCCGGCTCCGATAACCCGATCGCCGCATGCACCGCCATGCTCTCCCTCCGCCAATTCTCCGCCTGCCGCGACTTCGCCTCCCGCTTCCCACCCTCCGACCGCCTCCCCCAAATCCTCGCAATCGCCGAAATTCTCTCCGCCGGCGACCTCTACTCCGTCCTCAATCTCCGCCGCTCCGACGCTGTTCTCGACCTGGCACTCGCCCGCCGGCACTACGCTAAGCTCGCCCTCCTCCTCGACCCCACCAGTACTGACAAATTCCCCTTCTCCGATGAAGCCCTCGCACGTGTCCGTGAGGCCTGGCACGTGCTCTCCGACCCGGAACGGCGCGGTGCTTATGACCGTGAATTTGAACAGCGCGGCGGAGAGACGACGGAGGGTGCCTCGACGGAGACGTTCTGGACTGCGTGTCCTTACTGCTGGAACTTGTATTTGTATGAGAAGAGGTACCAGGACAGTGCGCTGCAGTGTCAGAGTTGCCGGAGAGCGTTTCATGGCATTGCGGTGAAGCCGCCGGTGGAGGATGGGGAGCCGGTGGTTGAGGGGGAGGAGCGGCGGCAGTACTATTGGTGTCGTGCGAGTGTGCCGTTGAAGTTTTATGAGGTGAAGGGTAAGGAGGGTGAGGGTGGAGGTGAGGGTGAGGGAAAGAACACGGTTCTTGAAAATGCCACCCAGTTTGTGTATATTTCCGATGATGATGTTGGTGGTGGTGGTGGTGGTGATGGGTTGTGGAAGAAGGTTGGTGTGGTTAATGAAGGGTGTGAGAGGGTGTGTCTTGATGATGACATTGGTTTTGATCTTGATGCGGATGATGGTGAATTGGAGTTCACTGAAGGAGCTGATGATGTCTTCATTGGTGGCATGCAGCATTTTCGAAATTACTACAACTCAGAAGCTTCAATGATAGGAAGTAGCTTTCCCCGGACATTCCTCTCACAAACATACAAGAACAGTTTCTCAAAGCCAAGATCAACTGAAGAGATCAAATTATTGGCTGCTAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAACGCGAATCAATGGTCAATATGACACGCTCCGCAACACCCTCCCCAACATAATCAAAAAGGACAAAGCAACAGTACTGTCAGAGACTATCAAGCAAGTGAAGGAGCTGAGGAAAAAAGTATCCAAATTGGAAGTTGATGGTCCAAAGGAGGTTAAGTTTCCTAGTGGGGCAGATAGACTGAACTTGGAAAAATGCAATGAAGACAAAGGTATGATAGTGAAGGCCACTTTAAGCTGTGAGGATAGGCCTGAATTGATGTCAGCCATAGCAAGGGCTCTGAGGTCAATGAAAGCCAATGTGATAAAGGCTGAGATGTTGACTGTGGGTGGAAGAACCAGAACTGTGTTGTGGGTGCAAGGTATTGGTACTGAAGGTTTGGGGAAGCTCAAGAGTACTTTGAAGGTTGTCATGCACAAGCCAAGCTTTAAGATGAGGAGGTTTACTCAATAA 1500 0.518 MDTSRGPGSDNPIAACTAMLSLRQFSACRDFASRFPPSDRLPQILAIAEILSAGDLYSVLNLRRSDAVLDLALARRHYAKLALLLDPTSTDKFPFSDEALARVREAWHVLSDPERRGAYDREFEQRGGETTEGASTETFWTACPYCWNLYLYEKRYQDSALQCQSCRRAFHGIAVKPPVEDGEPVVEGEERRQYYWCRASVPLKFYEVKGKEGEGGGEGEGKNTVLENATQFVYISDDDVGGGGGGDGLWKKVGVVNEGCERVCLDDDIGFDLDADDGELEFTEGADDVFIGGMQHFRNYYNSEASMIGSSFPRTFLSQTYKNSFSKPRSTEEIKLLAAKKHSEAEKRRRTRINGQYDTLRNTLPNIIKKDKATVLSETIKQVKELRKKVSKLEVDGPKEVKFPSGADRLNLEKCNEDKGMIVKATLSCEDRPELMSAIARALRSMKANVIKAEMLTVGGRTRTVLWVQGIGTEGLGKLKSTLKVVMHKPSFKMRRFTQ* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0915 499 SUPERFAMILY Chaperone J-domain 48 123 IPR036869 -
Lja2g0915 499 ProSiteProfiles dnaJ domain profile. 55 123 IPR001623 -
Lja2g0915 499 Pfam Helix-loop-helix DNA-binding domain 341 386 IPR011598 GO:0046983
Lja2g0915 499 CDD DnaJ 55 112 IPR001623 -
Lja2g0915 499 SMART finulus 343 392 IPR011598 GO:0046983
Lja2g0915 499 Pfam DnaJ domain 55 120 IPR001623 -
Lja2g0915 499 CDD ACT_UUR-ACR-like 426 470 - -
Lja2g0915 499 Gene3D - 423 495 - -
Lja2g0915 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Lja2g0915 499 Gene3D - 337 396 IPR036638 GO:0046983
Lja2g0915 499 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 242 - -
Lja2g0915 499 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 261 292 - -
Lja2g0915 499 Gene3D DnaJ domain 51 136 IPR036869 -
Lja2g0915 499 SUPERFAMILY ACT-like 426 489 IPR045865 -
Lja2g0915 499 Coils Coil 376 396 - -
Lja2g0915 499 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 242 - -
Lja2g0915 499 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 261 292 - -
Lja2g0915 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 395 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0915 Lja-Chr2 8559600 8571307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0915 43 216 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.143 1.43e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0915 DnaJ 1.7e-08 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0915 - - gmx:102667782 282.337