Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0911 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGACAAGTCACGTTCTCCAAGCGGCGCAGGGGGCTCTTCAAGAAAGCTGAAGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCCCTTGTAGTCTTCTCTTCCACTGGGAAGCTCTTCGAGTACTCCAACTTAAGTATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTTGCAAAACTGGAACAACCGTCTCTCGAGTTGCAGTTAGTTGAAAACAGCAACTGCTCCAGATTGAATAAGGAAGTTGCTGAGCAGAGTCGTCTATTAAGGCAGCTAAGAGGAGAGGATCTTCAAGGTTTAAATATTGAAGAATTACAACAACTGGAGAGGTCCCTGGAAACTGGATTGGGGCGTGTAATCGAAAAGAAGGGAGAGAAGATTATGAATGAGATCAATGGTCTCCAAATAAAGGGAAAGCAATTGATGGAGGAGAACGAACGGCTAAAGCGTCACGTGGCTGGCATGATTAGCACAGGCTTAATGCATGGAGATACTGAGTCAGAATTGTTAGTTATGGAAGAAGGTCATTCTTCAGAGTCTGTTACTAACGTTTGTAACTCCACTACTGGGCCTCCCTTAGAGGATGATAGCTCAGACACGTCGCTCAAACTGGGGCTTCCATACTAA 684 0.4518 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEYSNLSMKEILERHHLHSKNLAKLEQPSLELQLVENSNCSRLNKEVAEQSRLLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMNEINGLQIKGKQLMEENERLKRHVAGMISTGLMHGDTESELLVMEEGHSSESVTNVCNSTTGPPLEDDSSDTSLKLGLPY* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0911 227 Coils Coil 150 170 - -
Lja2g0911 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Lja2g0911 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lja2g0911 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Lja2g0911 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0911 227 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0911 227 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
Lja2g0911 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 Coils Coil 94 114 - -
Lja2g0911 227 MobiDBLite consensus disorder prediction 193 227 - -
Lja2g0911 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lja2g0911 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g0911 227 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0911 Lja-Chr2 8522400 8526613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0911 1 227 MADS-box Gene Family AT2G22540 68.201 2.97e-106 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g0911 K-box 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0911 - - gmx:100789126 363.614