Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0909 ATGGCTCTTCCTGGTTCCCTGCAGCTGTCCCATGGATGGAACCTCGGCTGCAATAAACATCCGAGGGTAACAGGAAGATGCAAGTTAGATTTATTAAGAGCAGGTCTTTCGTATCCTGTATCGTTCATAAAACAGGACTACAGCGGTTTTCAACAACTTCGACATATAAACAGGTCAACACATACATTGTCTTGCAAACCCCGCTCTTTTAAGTGTCATTGTTTTATAGTGCCATGCGGACCAAGCAAGCTTCCTGCCGTTAAGGTGGCTGCGACAGTGCTGACAAGGTGCTGTAATGTCTTACAAAATAGTCCAGTCGTTGTAAATTTGATTCCTGCTGTTGGCATTATCATTTTTGCAATATGGGGTGTTGGCCCATTAATGTTTCAGACAAGGAAACTGCTTTTTCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCATTATATAGTAACTTCTTACCTTCGGCCATTGCTGTTATGGACTGGAGCCATATTTATTTGCAGAGCATTGGAACCAGTTATTCTACCTACAGAATCTGGTCAGGTTGTCAAGGAACGGCTTCTGCATTTTGTCAGATCATTGTCGACTGTACTGGCCTTCGCCTATTGTTTATCAAGTGTAATTCAACAAGCACAGAAATTTGTAGCAGAGAGTACTGATGCAAGTGAGACGACGAGAAACATGGGATTCCAATTTGCAGGCAAAGCTCTTTACTCTGCAGTATGGGTTGCTGCCTTTTCATTGTTCATGGAATTGCTGGGATTCTCAACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGCGATGATTCATGCCACTCGGCCTTTTGTGGTTAATGAGTGGATTCAGACCAAGATAGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGTGAAGATCGTGAAGCAGTACACATTCCAAACCACAAATTTACAGTGAATGTCGTGCGGAACCTCAGTCAAAAAACACATTGGCGAATCAAAACCCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTGGCCAAAAACCCTCAAGTTGAGCAGCAGAGGTTACACAGGAGAGTGTTTTTAGACAACGTACATACTGAAAATCAGGCTCTCATGATTCTGATTTCTTGTTTCGTCAAAACCTCACATTTTGAAGAATATTTGTGTGTAAAGGAAGCCATACTTCTGGATCTTCTTAGAGTCATCGGCCATCACCGGGCCCGACTCGCAACACCAGTCCGTACTCTGCAGAAAATATACAGTGATGTTGACTTAGACAACATACCATATGCAGATTCCACATTTAATGGAGCAGTATCTAAGCGTCCATTATTAATGATCGAATCGCCTTACAAGATCAGTACAGATGAGAAGACGAAAAGTCGATCAGCACGAGCAGCTGTTGATCAAGATAGCAAAACAGCTGCGCGAACCAATCTTGACACGATTGGACCAACAGGAGTACCAGATAACAAGGTTAGAGAAACTCAAGAGGTGGATACCAAAGTAATGGCATCTACTAATTCTGATGCAAATGGAAACTCTATGACTGCTGTGACACCCAGACCTGATCCTGAAGTGGGTGAAAACAAGCGACTGAAATCAAATTCAAACAAAGCAAATCTAGATGTGTCAGATATATCTTCTAACTCTGAATTAGATAATTCAACCCAGAAGGACATCCATGCCAAACAATCCAAGGGTCAGACCATGAAAAACGTCAAGTCGAACGTCGACTCTGACAATCTAGTTTCATCTACATCAACTAACAATGCTGACAAAGCTGGTGGACTTCATACGAATATTCCGGCAAAACAGCAAGGAGAAAAGAAACCTGCTGCACAGCCTCATGCATCTAGGAGTGTTCTAGAAGATAATATAGTACTTGGTGTTGCATTGGATGGATCGAAGAGGACTCTTCCCATTGATGAGGGGAGTGACACTGACACGGTGACAGCACAAGAGGCCAAGGAAATGGCTGCATTCCAGGGTGGAAATGGATCTCCAAAGGCCGCGGATGGGAATGGCAAGTAA 2148 0.4288 MALPGSLQLSHGWNLGCNKHPRVTGRCKLDLLRAGLSYPVSFIKQDYSGFQQLRHINRSTHTLSCKPRSFKCHCFIVPCGPSKLPAVKVAATVLTRCCNVLQNSPVVVNLIPAVGIIIFAIWGVGPLMFQTRKLLFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAIFICRALEPVILPTESGQVVKERLLHFVRSLSTVLAFAYCLSSVIQQAQKFVAESTDASETTRNMGFQFAGKALYSAVWVAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNVHTENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDVDLDNIPYADSTFNGAVSKRPLLMIESPYKISTDEKTKSRSARAAVDQDSKTAARTNLDTIGPTGVPDNKVRETQEVDTKVMASTNSDANGNSMTAVTPRPDPEVGENKRLKSNSNKANLDVSDISSNSELDNSTQKDIHAKQSKGQTMKNVKSNVDSDNLVSSTSTNNADKAGGLHTNIPAKQQGEKKPAAQPHASRSVLEDNIVLGVALDGSKRTLPIDEGSDTDTVTAQEAKEMAAFQGGNGSPKAADGNGK* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0909 715 SUPERFAMILY Sm-like ribonucleoproteins 280 350 IPR010920 -
Lja2g0909 715 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 715 - -
Lja2g0909 715 MobiDBLite consensus disorder prediction 572 634 - -
Lja2g0909 715 MobiDBLite consensus disorder prediction 676 715 - -
Lja2g0909 715 MobiDBLite consensus disorder prediction 493 660 - -
Lja2g0909 715 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 715 IPR045042 -
Lja2g0909 715 Gene3D - 192 294 - -
Lja2g0909 715 MobiDBLite consensus disorder prediction 538 557 - -
Lja2g0909 715 Pfam Mechanosensitive ion channel 237 443 IPR006685 GO:0016020|GO:0055085
Lja2g0909 715 Gene3D - 296 351 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0909 Lja-Chr2 8497673 8504972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0909 26 715 Mechanosensitive Ion Channel Family AT5G10490 55.331 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0909 K22047 - gmx:100796304 1102.04