Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0901 ATGGCTCGTTCAACAACCAGTGCTAATAACTGGCTATCGTTTTCACTCTCACCCATGGAAGATCACCTTGTTCATCAATACGACGCCGCTTCCGCCACTTCCTCTCACCACTACTTTCTCGACAACTTGTATGCTGCTAACGGTGGTTGGGGGAACTCGAAGTCTCAGACACTCTACGGCGAGGAGCAAGTGGAGCAACAGCAACAGCCACCGTCGTTTCTTTTCATGAACGCGTTGCAGTCGCAGAGCGTGAGCCACGCGCCGCCGCCGAAGCTGGAGGATTTTCTCGGAGATCATAGCCAGACAGAGACGCAGGACTCTTCCCTGACTCACATGTACGACCACCACAACCACCATGCCTCCTCCGCCGCTTACTTCGGAAGCGACCACCAAGATCTCAAAGCCATTGCAGCGTCCTTCCAAGCTTTCTCCACCAACTCCGGCTCAGAGGTGGATGACTCTTCCTCCATCGGGAAATCTCAACCCAACGAGTTCGCTACTCGCTCCATCGAGTCTTCCGGTAACGATTTCGGCTTCTCCACCGCCGCAACCGCCACCGGAGCGTTATCTCTCTGCGTTGCTCAGAGTCCCCAGGAGGTTGTTGTCGCCGCTGCTGATTCCGACAGCTCGAAGAAGGTCGCTGATACTTTCGGTCAGCGAACTTCCATTTACAGAGGTGTAACCAGGCATCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAGGGTCAGGCAAGGAAAGGGCGTCAAGTCTATTTGGGTGGGTATGACAAGGAAGAAAAGGCAGCAAGATCCTATGATTTGGCAGCTCTAAAGTATTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAATTACTCAAAGGAACTGGAAGACATGAAACATGTAACAAAGCAAGAATTTATTGCATCCTTGAGAAGGAAAAGTAGCGGGTTTTCCAGAGGAGCTTCAATCTATAGAGGTGTCACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGCGTTGCCGGGAACAAAGATCTGTATTTAGGAACATTCGCAACTGAAGAGGAAGCAGCAGAAGCATATGACATTGCAGCCATAAAGTTCAGAGGGGCAAACGCGGTAACCAATTTCGAGATGAACCGATACGATGTGGAAGCCATAATGAACAGTTCTCTTCCAGTTGGAGGTGCAGCAAAACGCTTGAAGCGTTCTCTGGAATCAGAACAGAAAGCAGCAGCTCAACTGAGCACAACTAGTCATCAACATCATCAGCAGTATTCACAGAGTGGTGCAAACATGAGTAACAGCATCAATTTCTCAGCCATTATTCCTCACCAGCCAGCTGCAGCTCCAATCCAATATGCAATTCCTTATGATTCAACGACAGCGTATTATCATCACAGCCTCTTCCAGCATCTTCATCAATCCAACGATGGCACTGCAGAGTCTGGTGTGAGTTCTAACAATGTTGCTGGACTGACTCCTCTGCCAGCATCAGCACCTGAGTTCTTTCTTTGGCCTAATCAGAATTATTGA 1551 0.4984 MARSTTSANNWLSFSLSPMEDHLVHQYDAASATSSHHYFLDNLYAANGGWGNSKSQTLYGEEQVEQQQQPPSFLFMNALQSQSVSHAPPPKLEDFLGDHSQTETQDSSLTHMYDHHNHHASSAAYFGSDHQDLKAIAASFQAFSTNSGSEVDDSSSIGKSQPNEFATRSIESSGNDFGFSTAATATGALSLCVAQSPQEVVVAAADSDSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYSKELEDMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMNSSLPVGGAAKRLKRSLESEQKAAAQLSTTSHQHHQQYSQSGANMSNSINFSAIIPHQPAAAPIQYAIPYDSTTAYYHHSLFQHLHQSNDGTAESGVSSNNVAGLTPLPASAPEFFLWPNQNY* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0901 516 Pfam AP2 domain 325 375 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 Pfam AP2 domain 223 281 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 ProSiteProfiles AP2/ERF domain profile. 223 289 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 ProSiteProfiles AP2/ERF domain profile. 325 383 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 Coils Coil 403 423 - -
Lja2g0901 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 9 512 - -
Lja2g0901 516 Gene3D AP2/ERF domain 223 291 IPR036955 GO:0003700|GO:0006355
Lja2g0901 516 Gene3D AP2/ERF domain 325 385 IPR036955 GO:0003700|GO:0006355
Lja2g0901 516 CDD AP2 222 291 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 512 - -
Lja2g0901 516 MobiDBLite consensus disorder prediction 84 103 - -
Lja2g0901 516 SUPERFAMILY DNA-binding domain 324 384 IPR016177 GO:0003677
Lja2g0901 516 SMART rav1_2 325 389 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 SMART rav1_2 223 295 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 PRINTS Ethylene responsive element binding protein signature 365 385 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 CDD AP2 324 383 IPR001471 GO:0003700|GO:0006355
Lja2g0901 516 SUPERFAMILY DNA-binding domain 222 291 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0901 Lja-Chr2 8419662 8424159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0901 50 516 AP2-EREBP Transcription Factor Family AT5G10510 55.617 1.38e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja2g0901 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0901 K09285 - gmx:100775390 685.641