Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0900 ATGAAATCTACTGGTGATAACGGAAAAGAGTTTTCGAGCGACGATGAGGCTTCTCCGAGGGGGATACTGGAAGCCCCTGTTTCTGGAACAGAGTCCGACCACAGCGGAAGCAGTGATTTCAGCTCATTTTCATCGGAGAAATCGGCGGCGGAGGTGGTGACGGAAGAGAAGGAGGTTGTTCGAGAAGTTTCTGTGCCGGCATGGAAGTCTATGATTGATGTTTTCAAGTTCAAAACTGTGCGAAGATTGACTGCAATTCCTCTGCTTGTGGCGAACCATGATGTGTCTAAGAAGGGTTTATCGAAAAAACTGGCTCGTATTCGAAGTGCTGAAGATAGTATTGATATTGGGGCTATTCCTACCAAACCCTCTTGGAGGAACTTCGAGTACGCTGAGCTTGTAGCTGCTACCAATGATTTCAGTTCAGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTATACAAAGGACAGTTACCTGATGGTCAAGTTATAGCAGTAAAGAGACTAATGAAGAATGAAAAGGATGCTGCAGACAGAGCTGGTGATTTCTTAACAGAGCTTGGGATCATTGCACACATTAACCACCCAAATGCCACACGCCTAGTCGGGTTCGGAATTGACCGTGGTCTCTACTTTGTCCTGCAATTTGCTCCACAAGGCAGCCTCGCTTCTATGCTTTTCGGTTCTGAATGCTTGGAGTGGAAGATGAGGTTCAAGGTAGCTACTGGGGTAGCAGAGGGATTGCATTATCTCCATCGAGATTGCCCAAGACGTATCATTCACAGGGACATCAAAGCTTCCAACATATTGCTCAATGAAAACAATGAAGCTGAGATTTCTGATTTTGGACTGGCAAAGTGGCTTCCAAATAACTGGGCACACCATGTTGTCTTCCCAATTGAAGGCACATTTGGGTATTTGGCTCCTGAGTACTTCATGCATGGACTTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGCTGCTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAACAGCAGGCAAAGTCTTGTGATCTGGGCCAAGCCTCTTCTGGACTCAAACAATGTGAAGGAAATAGTAGACCCAAGATTAGAAGAGAATTATGATCCTACTGAAATGAAGCTTGCAATGGCTACCGCTTCCATGTGCGTCCACCATACATCCTCAAAGCGGCCATATATGAATCAGGTTGTGCAGCTCCTGAAGGGTGAAGAGACAATTATCGATGCGAAGCCAACTACAGTTGCACAAAAATCTCTTATGTTGGAGGCATGTGACCTAGAAGATTATACTTGTTCTAATTACTTGAAGGACCTCAACCGCCATAGGCAACTAGTCATGGAGTGA 1365 0.4549 MKSTGDNGKEFSSDDEASPRGILEAPVSGTESDHSGSSDFSSFSSEKSAAEVVTEEKEVVREVSVPAWKSMIDVFKFKTVRRLTAIPLLVANHDVSKKGLSKKLARIRSAEDSIDIGAIPTKPSWRNFEYAELVAATNDFSSENLVGKGGHAEVYKGQLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHPNATRLVGFGIDRGLYFVLQFAPQGSLASMLFGSECLEWKMRFKVATGVAEGLHYLHRDCPRRIIHRDIKASNILLNENNEAEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRQSLVIWAKPLLDSNNVKEIVDPRLEENYDPTEMKLAMATASMCVHHTSSKRPYMNQVVQLLKGEETIIDAKPTTVAQKSLMLEACDLEDYTCSNYLKDLNRHRQLVME* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0900 454 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Lja2g0900 454 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 11 454 - -
Lja2g0900 454 Gene3D Transferase(Phosphotransferase) domain 1 219 425 - -
Lja2g0900 454 MobiDBLite consensus disorder prediction 1 45 - -
Lja2g0900 454 ProSiteProfiles Protein kinase domain profile. 140 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0900 454 SUPERFAMILY Protein kinase-like (PK-like) 124 411 IPR011009 -
Lja2g0900 454 SMART serkin_6 140 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0900 454 PANTHER OS08G0249100 PROTEIN 11 454 - -
Lja2g0900 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Lja2g0900 454 Pfam Protein kinase domain 142 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0900 454 MobiDBLite consensus disorder prediction 30 45 - -
Lja2g0900 454 Gene3D Phosphorylase Kinase; domain 1 101 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0900 Lja-Chr2 8411091 8417595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0900 106 453 Trihelix Transcription Factor Family AT1G70460 40.947 3.17e-71 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja2g0900 Pkinase 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0900 - - gmx:100818314 706.827