Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0890 ATGGCGACACAACAACCAGAATTTGAGCATCCTAAGAAGGCATTCGGATGGGCAGCTAGAGACACTTCCGGTCTTCTCTCCCCTTTCAATTTCTCCAGAAGGGAAACAGGGGAGAAGGACGTGGCATTCAAAGTGTTGTATTGTGGGATATGCCACTCGGACCTCCACATCGTGGAGAATGATTTTGGCATGTCCACTTATCCACTAGTTCCAGGGCATGAGATTGTTGGTGTGGTGACAGAGGTGGGAAGCAGAGTTCACAAGTTCAAAGTTGGGGACAAAGTGGGTGTGGGATGCTTGATTGATTCATGCCACTCATGTCAAAACTGTGTTGAAAATCTTGAGAATTATTGCCCACAACTTATTCTTTCTCAAGGTGGTGCCAAACATAAAGACGGTACCACCACATATGGAGGCTACTCTGATTCAATGATTGCCGATGAGCACTTTGTGATTGGCATTCCTGATGAATTCCCTCTTGATGCTGCTGCACCACTCCTCTGTGCTGGAATCACAGTGTATAGCCCTTTGAAATATTTTGGACTTGACAAACCTGGTCTTCATATAGGTGTGGTTGGTCTTGGTGGATTAGGCCATTTGGCTGTCAAGTTTGCCAAAGCTTTTGGGGCTAATGTCACAGTAATCAGTACATCACCTAATAAACAGAAAGAAGCACTTGAGAATTTGGGAGTTGATTCATTTCTGATTAGCCATGACCAAGATCAGCTGCAGGCTGCAATTGGCACTTTGGATGGCATTATTGACACAGTTTCTGCAAGTCATTCTCTGTTACCTCTGATTGGTTTACTGAAATCGCATGGAAAACTTATAATGGTTGGTTTACCAGACAAGACTCTGGAGCTTCCATTGATTCCTTTAATTAAGGGGAGAAAGATAATAGCTGGGAGTATGATTGGAGGAATAAAGGAGACACAAGAAATGATGGAGTTTGCTGCAGAACACAATGTAAAACCTGACATTGAGGTCATACCAATTGATTATGTCAACAAAGCTATGGAGCGCCTCCACAAAGCAGATGTGAAATATCGTTTTGTGATTGACATTGGAAACTCGCTAAAGCCAAGCTTTTAA 1092 0.4322 MATQQPEFEHPKKAFGWAARDTSGLLSPFNFSRRETGEKDVAFKVLYCGICHSDLHIVENDFGMSTYPLVPGHEIVGVVTEVGSRVHKFKVGDKVGVGCLIDSCHSCQNCVENLENYCPQLILSQGGAKHKDGTTTYGGYSDSMIADEHFVIGIPDEFPLDAAAPLLCAGITVYSPLKYFGLDKPGLHIGVVGLGGLGHLAVKFAKAFGANVTVISTSPNKQKEALENLGVDSFLISHDQDQLQAAIGTLDGIIDTVSASHSLLPLIGLLKSHGKLIMVGLPDKTLELPLIPLIKGRKIIAGSMIGGIKETQEMMEFAAEHNVKPDIEVIPIDYVNKAMERLHKADVKYRFVIDIGNSLKPSF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0890 363 Gene3D - 17 355 - -
Lja2g0890 363 CDD CAD1 15 354 - -
Lja2g0890 363 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Lja2g0890 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Lja2g0890 363 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 4 362 - -
Lja2g0890 363 SMART PKS_ER_names_mod 24 353 IPR020843 GO:0016491
Lja2g0890 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Lja2g0890 363 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
Lja2g0890 363 SUPERFAMILY GroES-like 22 186 IPR011032 -
Lja2g0890 363 Gene3D - 169 325 - -
Lja2g0890 363 PANTHER ALDEHYDE REDUCTASE 4 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0890 Lja-Chr2 8309371 8311100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0890 12 362 Monolignol Biosynthesis Gene Families AT4G37990 70.085 2.62e-169 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0890 - K23232 gmx:100816901 596.275