Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0888 ATGAGGAAACGGGATTTATTCTTGTGGTTGTCCAGAATGGCTCTACAGTTCTTCTTCTTGCTCGGTGCCTGTTCTGAGATTACCTCATTTAGCAGAGAAATCAGTAACTCAGAATCGACCTCTGCCAATTCTCTAGAAAATCGAAATCCTCACCAGGTGGTGATTAACAACAGCTTCGTGTCCATCACTTTATCAAAACCAGAGGGATATATTATTGGAATATCGTATGGTGGAACTGACAATTTACTTAATACTCTAATTGACGTACAAGATAGAGGGTACATGGACGTTGTTTGGAACCAACCAGGGAAACCTCCCAAATTTCAGAGAATCCATGGGACAAAATTCTCAGTCATAACCTCGGGCGACGACATGGTGGAGGTTTCATTTTTGAGCGAATGGAAATCCTCTATGAAAGGTTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTACGAAGAGGCGATTCAGGGTTCTATTCATATGCAATATTTGAGTTCAACTATATGGCTATATCAAACACTAGGCAAAGGATGATGCCCTCAGACAAAGATAGAAAAGCAGGTCAACGCCTAGCATATCCTGAAGCTGTTCTCTTAACCCATCCATCTAACCCACTATTTAAGGGAGAGGTGGATGATAAATACCAATACTCAAGTGAGAACCAAGACAACGATGTTCAAGGCTGGACTACCACAGATTCTAAAGCACCAACCGTGGGTTTCTGGATCATAACACCAAGTAATGAATTCCGCAATGGTGGGCCCATTAAACAAGATCTCACCTCTCATGTTGGCCCCACCCTGCTTTCCATGTTTACCAGCACCCACTATGCTGGCACAGATGCAGTCATGGCATTTAAAGAAGGGGAGACATTTAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACAATGCATCAAGCAATAGTAAATCTTTATGGTCAGATGCTGCAAAAAAGCTATCCAATGAAGTTAAAAGCTGGCCTTATGATTTCCCTCGATCACAAGATTTCTTTCCATCCAAACAGCGAGGAAAAGTTACTGGACAGTTACAAGTCAAAGATGGGGGAAAAACATCTAAATATCCAAACAATGCCTACATTGGTCTAGCTTTTCCCGGTGAAGCAGGATCTTGGCAGACAGAAAGCAAGAGTTATCAATTCTGGACTCGGACTGACAAAAATGGAAACTTCAAAATAGAAAATATTGTCCCTGGGGACTACAACTTGTATGCATGGATCCCTGGCTTTATTGGAGATTACAAATATAATGATAAAATCACCATCGAATCAGGGCGTTCCATCAAATTGGGTACACTTGTATATAGGCCTCCAAGAAATGGTTATACTCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTTTGTACCAGACCCTAACCCTAAACTCATAAACAACTTATACAAGAACGATACCCATGACAAGTATAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATACCCACATCATGATCTAGTTTACACGGTTGGTGTTGACAACTATAAAAATCATTGGTTTTTTTCTCATGTTAACAGGAAGATAGGAAAAAACTCACTCCAACCAACCACCTGGAAGATTGTGTTTCAACTTCAAAATAACACATTGAAAGGAAAGTACACACTACAACTGGCCCTGGCATCCGCCTCTAATGCTGAAGTGCAGGTTTGGTTCAATGGCCGGAATGCTGATCGTCCCTACTTCACAACGGGGCAAATAGGCAATGACAGTGCAATAGCAAGGCATGGCATTCATGGATTGCACAGGTTGTATAGCATAGATGTAGCAAGTGATCAATTCGTAAAAGGAAAGAACACAATCTATCTGAGGCAGTCAATAGCTACAAGTCCTTTCCAAGGAGTAATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTCCAGATACTTGA 1950 0.4123 MRKRDLFLWLSRMALQFFFLLGACSEITSFSREISNSESTSANSLENRNPHQVVINNSFVSITLSKPEGYIIGISYGGTDNLLNTLIDVQDRGYMDVVWNQPGKPPKFQRIHGTKFSVITSGDDMVEVSFLSEWKSSMKGSSVPINIDQRYILRRGDSGFYSYAIFEFNYMAISNTRQRMMPSDKDRKAGQRLAYPEAVLLTHPSNPLFKGEVDDKYQYSSENQDNDVQGWTTTDSKAPTVGFWIITPSNEFRNGGPIKQDLTSHVGPTLLSMFTSTHYAGTDAVMAFKEGETFKKVFGPVFVYLNNASSNSKSLWSDAAKKLSNEVKSWPYDFPRSQDFFPSKQRGKVTGQLQVKDGGKTSKYPNNAYIGLAFPGEAGSWQTESKSYQFWTRTDKNGNFKIENIVPGDYNLYAWIPGFIGDYKYNDKITIESGRSIKLGTLVYRPPRNGYTLWEIGIPDRSAAEFFVPDPNPKLINNLYKNDTHDKYRQYGLWERYTDLYPHHDLVYTVGVDNYKNHWFFSHVNRKIGKNSLQPTTWKIVFQLQNNTLKGKYTLQLALASASNAEVQVWFNGRNADRPYFTTGQIGNDSAIARHGIHGLHRLYSIDVASDQFVKGKNTIYLRQSIATSPFQGVMYDYIRLESPPTPDT* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0888 649 Gene3D - 449 642 - -
Lja2g0888 649 SUPERFAMILY Galactose-binding domain-like 449 642 IPR008979 -
Lja2g0888 649 Pfam Polysaccharide lyase family 4, domain II 366 438 IPR029413 -
Lja2g0888 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 645 - -
Lja2g0888 649 CDD RGL4_C 454 642 - -
Lja2g0888 649 Gene3D - 341 439 - -
Lja2g0888 649 Pfam Polysaccharide lyase family 4, domain III 452 641 IPR029411 -
Lja2g0888 649 SUPERFAMILY Galactose mutarotase-like 49 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja2g0888 649 CDD RGL4_M 345 442 IPR029413 -
Lja2g0888 649 Gene3D - 44 327 IPR014718 GO:0030246
Lja2g0888 649 SUPERFAMILY Starch-binding domain-like 341 440 IPR013784 GO:0030246
Lja2g0888 649 Pfam Rhamnogalacturonate lyase family 168 213 IPR010325 -
Lja2g0888 649 Pfam Rhamnogalacturonate lyase family 35 167 IPR010325 -
Lja2g0888 649 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lja2g0888 649 CDD RGL4_N 52 314 - -
Lja2g0888 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0888 Lja-Chr2 8297305 8302138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0888 45 644 Polysaccharide Lyase AT1G09890 53.016 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0888 K18195 - gmx:100781089 862.062