Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0887 ATGAGGAAATGGGATTTATTCCTGTGGTTGTTTAGAATGGCTCTACAGTTCTGCTTCTTGCTCGGTGCCTGTTCTGAGATTACCTCATTTAGCAGTAACTCAGAATCGATTTCTGCCTATTCTCCAGTCAACCTGAATACAGAAAATCCTCACCAGGTGGTGATTAACAACAGTTTGGTGTCCATCACTTTATCAAGACCAGAGGGATATATCATTGGAATATCGTATGGTGGAATTGACAATTTACTTAATACTCTAATTGACGTACAATATAGAGGGTACATGGACGTTGTTTGGAACCAACCAGGAACACCTCCCCAATTTCAGAGAATCCAAGGGACAAAATTCTCAGTCATAACAAAGGATGATGATATGGTGGAGATTTCATTTTTTAGCGAATGGACATCATCTATGGAAGGTTCAAGTGTCCCTATGAACATAGACCAAAGGTATATATTACGACGAGGGGATTCAGGGTTTTATTCATATGCAATATTTGAGCGATCTGAAGGATTACCTGCAGTGGTGGTAGATCAAACTAGGCTTGTCTTCAGGCTTAGAGAAGACATGTTCAACTATATGGCTATATCAGATACTAGGCAAAGGATAATGCCCTCACTCAAAGATAGAAATGAAGGTCAACACCTGGCATATCCTGAAGCTGTTCTCCTAACCCATTCATCTATCCCACAATGTAGGGGAGAGGTGGATGACAAATACCAATACTCAAGTGAGAACCAAGACAACAATGTCCAAGGCTGGACTACCACAGATTCTGCACCAACCGTGGGTTTCTGGATCATAACACCAAGTAATGAATTCCGCAATGGTGGGCCCATTAAACAAGATCTCACCTCTCATGTTGGCCCTACTCTACTCTCCATGTTTACCAGCACCCACTATGCTGGCACAGATGCAGTCATGGCATTTAAAGAAGGGGAGACATTTAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACAATGCATCAAGCAATAGTAAATCTTTATGGTCAGATGCTGCAAAAAAGCTATCCAATGAAGTTAAAAGCTGGCCTTATGATTTCCCTCGATCACAAGATTTCTTTCCATCCAAACAGCGAGGACAAGTTACTGGACAGTTACAAGTAAAAGATGGGGGAAAAACGTCTGTATATCCAAGCAATGCCTACATTGGTCTAGCTTTTCCCGGTGAAGCAGGATCTTGGCAGACAGAAAGCAAGAGTTATCAATTCTGGACTCGAACTGACGAAAATGGAAACTTCAAAATAGAAAATATTGTCCCTGGGGACTACAACTTGTATGCATGGATCCCTGGCTTTATTGGAGATTACAAATATAATGATATAATCACCATCGAATCAGGGCGTTCCATCGAATTGGGTACACTTGTATATAGGCCTCCAAGAAATGGTTATACTCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTTTGTACCAGACCCTAACCCTAGACTCATGAACAAGTTATACAAGAACGATCCCCATGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATACCCAGATCATGATCTAGTTTACACGGTTGGTGTTGACAATTATAAAAATCATTGGTTTTTTTCTCATGTTAACAGGAAGATAGGAAAAAACACATTCCAACCAACCACATGGGAGATTGTGTTTCAACTTCAAAATAACACATTGAAAGGAAAGTACACACTACAATTGGCCCTGGCATCAGCCTCTAATGCTGAAGTGCAGGTTTGGTTCAATGGCTGGAATGCTGATTATCCCTACTTCACAACAGGGGAAATAGGCAATGACAGTGCAATAGCAAGGCACGGCATTCATGGATTGCACAGGTTGTATAGCATAAATGTAGCAAGTGATCAATTGGTAACAGGAAAGAATACAATCTATCTGAGGCAGTCAATAGCTACAAGTCCTTTCCAAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTCCAGATACATGA 2016 0.4097 MRKWDLFLWLFRMALQFCFLLGACSEITSFSSNSESISAYSPVNLNTENPHQVVINNSLVSITLSRPEGYIIGISYGGIDNLLNTLIDVQYRGYMDVVWNQPGTPPQFQRIQGTKFSVITKDDDMVEISFFSEWTSSMEGSSVPMNIDQRYILRRGDSGFYSYAIFERSEGLPAVVVDQTRLVFRLREDMFNYMAISDTRQRIMPSLKDRNEGQHLAYPEAVLLTHSSIPQCRGEVDDKYQYSSENQDNNVQGWTTTDSAPTVGFWIITPSNEFRNGGPIKQDLTSHVGPTLLSMFTSTHYAGTDAVMAFKEGETFKKVFGPVFVYLNNASSNSKSLWSDAAKKLSNEVKSWPYDFPRSQDFFPSKQRGQVTGQLQVKDGGKTSVYPSNAYIGLAFPGEAGSWQTESKSYQFWTRTDENGNFKIENIVPGDYNLYAWIPGFIGDYKYNDIITIESGRSIELGTLVYRPPRNGYTLWEIGIPDRSAAEFFVPDPNPRLMNKLYKNDPHDKFRQYGLWERYTDLYPDHDLVYTVGVDNYKNHWFFSHVNRKIGKNTFQPTTWEIVFQLQNNTLKGKYTLQLALASASNAEVQVWFNGWNADYPYFTTGEIGNDSAIARHGIHGLHRLYSINVASDQLVTGKNTIYLRQSIATSPFQGVMYDYIRLESPPTPDT* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0887 671 Gene3D - 45 349 IPR014718 GO:0030246
Lja2g0887 671 Pfam Polysaccharide lyase family 4, domain III 474 663 IPR029411 -
Lja2g0887 671 Pfam Polysaccharide lyase family 4, domain II 388 460 IPR029413 -
Lja2g0887 671 SUPERFAMILY Galactose-binding domain-like 471 664 IPR008979 -
Lja2g0887 671 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lja2g0887 671 SUPERFAMILY Galactose mutarotase-like 47 336 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja2g0887 671 Gene3D - 471 664 - -
Lja2g0887 671 SUPERFAMILY Starch-binding domain-like 363 462 IPR013784 GO:0030246
Lja2g0887 671 CDD RGL4_C 476 664 - -
Lja2g0887 671 Pfam Rhamnogalacturonate lyase family 36 236 IPR010325 -
Lja2g0887 671 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 667 - -
Lja2g0887 671 Gene3D - 363 461 - -
Lja2g0887 671 CDD RGL4_M 367 464 IPR029413 -
Lja2g0887 671 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 667 - -
Lja2g0887 671 CDD RGL4_N 52 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0887 Lja-Chr2 8284451 8289095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0887 39 666 Polysaccharide Lyase AT1G09890 54.488 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0887 K18195 - gmx:100781089 885.945