Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0880 ATGGGAAGAGGGAAGATTGTGATTCAAAGGATCGACAACTCCACGAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGTTAGCCATCCTCTGTGATGCCCAAGTTGGACTTGTCATATTCTCCAGCACAGGAAAGCTTTATGAATATTCAAGCACCAGCATGAAATCAGTGATCGAGAGATATAAGACATGCAAGGGGGAACATCAACTAATAAATCCAGAATCTGAAGCCAAGTTTTGGCAAAGGGAGGCAGAAGGTTTAAAGCAGCAAGTGCAGAATCTACAAGAAAACCATAGGCAATTGCTTGGAGAACAGCTCTATGGTTTGAGTGTGAGAAACCTACAGGATCTAGAGAATCAACTAGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAAAATACTCTGACAGATGAGATCCAAGAGCTGAACCGAAAGGGAAACCTCATACATCAGGACAACATGGAGCTTTATAAGAAGGTAAACCTCATTCAACAAGAAAACAAACAACTACGCAAAAAGGTGTATGGCACAACTGAAACGGCGACAACGAGCAGAAATCCATTTGTTCTGTTTCCAAATGCAGGAGGGTATCCACAATCAGTGGTCCAATTTCAGTTAAGCCCGCCTGAGTAA 660 0.4273 MGRGKIVIQRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYSSTSMKSVIERYKTCKGEHQLINPESEAKFWQREAEGLKQQVQNLQENHRQLLGEQLYGLSVRNLQDLENQLEMSLQGVRMKKENTLTDEIQELNRKGNLIHQDNMELYKKVNLIQQENKQLRKKVYGTTETATTSRNPFVLFPNAGGYPQSVVQFQLSPPE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0880 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 Coils Coil 162 182 - -
Lja2g0880 219 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0880 219 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lja2g0880 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0880 219 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Lja2g0880 219 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 198 - -
Lja2g0880 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
Lja2g0880 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lja2g0880 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g0880 219 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0880 Lja-Chr2 8217644 8228441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0880 1 219 MADS-box Gene Family AT2G22630 61.818 9.54e-92 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g0880 K-box 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0880 K09264 - gmx:100795778 317.39