Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0867 ATGGAGCTTTCTCATCTTAGTTTTCTGGAGGAACTACTAGCTCCAAGAAAAGACACTTCTTGTTGGAATGCTTTGTCCACTGAGTTGAACGAGCCACTCCCTAGTGCTTGGAGCTTTGACTCATTTGATGAGAATCAAGCTTTAGCTTCTCTATATCCTCCATTTGCTGCATTTTCAACACCATTAGACCAGAGATTTGAATGTCCTTATGGCAGTGATGCAGCTGCAGCATACCCATTTGTTGGTGGTTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAAAGAGGAGTCATCAGCACCACCTCCACTTTTGCCTCAAGAAGATAACCAGAGTTTGGATGAAGAGTTTGGGTTTCTGGGCAGTGATAATAACCAGGGTTTGGAGCAGATAAAAGATAGCTGCAAAATCGAGGAACAGGTTTCAGAGGTTCCAATGGTGTTCAACATGGGTATGTGTGGAGAGAAAAAGGCTAAATCCAAAAAGCTAGAAGGACAGCCTTCTAAGAATCTCATGGCAGAGAGGAGGAGGAGAAAGCGTCTCAATGACCGGCTTTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTTGAAAGGATTGGTAACCTGCAAGAAGAAGAAACGGAGGAGGGAAAGAATCAGATAGACCTCTTGGGAATTTCTAAGGAGCAAAAGCCAAATGAAGCAATGGTAAGAAATTCTCCCAAGTTTGATGTTGAAAGAAAAGACCAAGACACGAGGATCAGCATCTGCTGTGCCACAAAGCCAGGGTTATTACTGTCAACAGTGAACACTTTAGAAGCATTAGGCCTTGAGATTCACCAATGTGTGATAAGCAGCTTCAGTGATTTTTCATTGCAAGCATCTTGCTCAGAGGCTGCTGGGCAGAGGAATTGTATGAGCCCTGAAGAGATAAAGCAAGCACTGTTCAGAAATGCAGGCTATGGTGGGAGATGTGTCTAG 1020 0.4382 MELSHLSFLEELLAPRKDTSCWNALSTELNEPLPSAWSFDSFDENQALASLYPPFAAFSTPLDQRFECPYGSDAAAAYPFVGGFTMPELDSSYTRKEESSAPPPLLPQEDNQSLDEEFGFLGSDNNQGLEQIKDSCKIEEQVSEVPMVFNMGMCGEKKAKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGNLQEEETEEGKNQIDLLGISKEQKPNEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKQALFRNAGYGGRCV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0867 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
Lja2g0867 339 Coils Coil 212 232 - -
Lja2g0867 339 MobiDBLite consensus disorder prediction 91 111 - -
Lja2g0867 339 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Lja2g0867 339 CDD ACT_UUR-ACR-like 265 306 - -
Lja2g0867 339 SMART finulus 172 221 IPR011598 GO:0046983
Lja2g0867 339 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 339 - -
Lja2g0867 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Lja2g0867 339 PANTHER - 2 339 - -
Lja2g0867 339 Gene3D - 155 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0867 Lja-Chr2 8121501 8123762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0867 157 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.852 1.27e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0867 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0867 - - lja:Lj2g3v1468080.2 638.262