Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0864 ATGACTCCGCCGGCGGTGGTTACGGAGGAGGAAGGGCGGTGCAAACTCACGTCGACGACGACGGTTGCGACTGCATCTTCACAAGTGGACTGTTTTGAGTTGAAGGAAAGGAATTACCTAGGGTTGTCGGATTGTTCATCAGTGGACAGTTGTGCTTCTACTGTACCTAGCTTGTGTGATGAGAAGAAGGGGAACTTGAATTTGAAGGCTACGGAGTTGAGGCTAGGTCTTCCTGGTTCTCAATCTCCTGAGAGGGATCCGGAGCTTTTCTCTTTAAGCTCGGCGGCGACGAAGCTCGATGAGAAGCCGCTGTTCCCTTTGCTTCCTACAAAAGATGGAATCAGCTCGACGTCGCAGAAAGCTGTGGTTTCCGGTAACAAGAGGGGGTTTGCTGATACCATGGATGGGTTTTCTCAGGGGATAAATGTAATGCTGTCTCCGCGACCTGCTGCTGCTCAGCCCACTACTATGAATGAAATGCCAAACAAGATGTTGCAAGAACGGCCCTGTGCTGCTAATGGAACTGGACATAACCATACAGGTGCTTCTATCAGTGGCAATGCACCGGCTTCTAAGGCTCAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCTATGGCCACCACATCTAAGAACAACGATGAGGTGGATGGAAAACCAGGTCTCTCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCACCCTATCTTAGGAAAGTGGATCTAAGAAGTTACACAACATATCAGGAGCTTTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAATTATTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGCTCTGAGTATGTTCTTTCTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCACTGAGACTTGCAGAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAATCAGGAGTTAG 1044 0.4837 MTPPAVVTEEEGRCKLTSTTTVATASSQVDCFELKERNYLGLSDCSSVDSCASTVPSLCDEKKGNLNLKATELRLGLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTSQKAVVSGNKRGFADTMDGFSQGINVMLSPRPAAAQPTTMNEMPNKMLQERPCAANGTGHNHTGASISGNAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGLSALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVGDVPWEMFTETCRRLKIMKGSDAIGLAPRAMEKSKIRS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0864 347 Gene3D - 224 340 - -
Lja2g0864 347 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 340 IPR003311 GO:0005634|GO:0006355
Lja2g0864 347 Pfam AUX/IAA family 71 338 IPR033389 -
Lja2g0864 347 ProSiteProfiles PB1 domain profile. 227 331 IPR000270 GO:0005515
Lja2g0864 347 PANTHER AUXIN-INDUCED PROTEIN 21 340 - -
Lja2g0864 347 SUPERFAMILY CAD & PB1 domains 227 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0864 Lja-Chr2 8080033 8084949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0864 229 332 B3 DNA Binding Superfamily AT5G37020 32.692 2.93e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja2g0864 AUX_IAA 4.7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0864 K14484 - gmx:547502 567.77