Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0857 ATGGGAGATGTGGCTAAGGACCTTACAGCTGGGACTTTTGGAGGGGCAGCACAATTGATAGTTGGACACCCATTTGACACAATCAAGGTCAAGCTCCAAAGCCAGCCTACACCAATCCCAGGCCAGCTTCCCAGATATTCTGGTGCAATTGATGCTGTCAAGCAGACACTAGCAGCTGAGGGCCCAAGGGGTTTATACAAAGGTATGGGTGCTCCACTTGCTACAGTAGCCGCCTTAAACGCTGTCCTGTTTACGGTTAGGGGGCAAATGGAGGCATTGTTCAGGTCCCATCCCGGTGCTTCCCTCACAGTACATCAGCAGGTTTTCTGTGGTGCTGGAGCTGGACTTGCTGTTTCCTTTCTAGTTTGCCCCACTGAACTGATCAAATGCAGGTTGCAAGCACAGAGTACACTCGCTGGTTCTGGAACAGCTGCAGTGGCAGTGAAATATGGAGGGCCCATGGATGTGGCCAGGCATGTTCTGAGGTCAGAAGGGGGTGCAAGAGGTCTTTTCAAGGGTTTGGTTCCCACTATGGCGCGTGAAGTGCCTGGGAATGCTGCAATGTTTGGTGCATATGAAGCATCGAAGCAGTTACTGGCTGGAGGCCCTGATACCTCTGGACTAGGTAGAGGTTCTCTCATAGTTGCTGGAGGCTTGGCTGGAGCTTCCTTCTGGTTTTTTGTCTACCCAACTGATGTTGTAAAGAGTGTGATTCAAGTAGATGACTACAAATATCCAAAGTTTTCTGGTTCCATTGATGCTTTTAGAAGGATTCTAGCCTCTGAGGGGATCAAAGGCCTTTATAAAGGTTTTGGTCCTGCAATGTTCCGAAGTGTTCCCGCAAATGCAGCATGCTTCTTGGCTTACGAAATGACAAGATCAGCTCTGGGATGA 894 0.4955 MGDVAKDLTAGTFGGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGMGAPLATVAALNAVLFTVRGQMEALFRSHPGASLTVHQQVFCGAGAGLAVSFLVCPTELIKCRLQAQSTLAGSGTAAVAVKYGGPMDVARHVLRSEGGARGLFKGLVPTMAREVPGNAAMFGAYEASKQLLAGGPDTSGLGRGSLIVAGGLAGASFWFFVYPTDVVKSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRSALG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0857 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Lja2g0857 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Lja2g0857 297 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 297 - -
Lja2g0857 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Lja2g0857 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 297 - -
Lja2g0857 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Lja2g0857 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Lja2g0857 297 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
Lja2g0857 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Lja2g0857 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Lja2g0857 297 PRINTS Mitochondrial carrier protein signature 223 241 IPR002067 GO:0055085
Lja2g0857 297 PRINTS Mitochondrial carrier protein signature 120 134 IPR002067 GO:0055085
Lja2g0857 297 PRINTS Mitochondrial carrier protein signature 173 193 IPR002067 GO:0055085
Lja2g0857 297 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0857 Lja-Chr2 7992209 7995237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0857 22 296 Antiporters AT1G79900 33.688 1.40e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0857 K15109 - gmx:100787332 529.635