Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0849 ATGAATCTCTGGAGCGACGACAACTCCTCCGTCATGGAGGCCTTCATGACCTCCTCCGACTTATCCTCCGTCTGGCCACCAGCGCCGCCTCCTCCCTCTCAATCCTCCGTCGCCGTCCTCAACCAGGACACTCTCCAGCAACGCCTCCAGGCCCTAATCGAAGGCGCAAGAGAGACCTGGACCTACGCCATTTTCTGGCAACCTTCCTACGACTACTCCGGCACCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGAAGAGGACAAAGCCAAGGCAAAAGCAAAAGCCAAAGCCAAAGCCACCTCCTCCGCTGAACAAGAACACCGCCGGAAGGTGCTTCGTGACTTGAATTCCCTCATCTCCGGTTCCTCCGCCCCCGCTTCTGATGACGCTGTCGACGAAGAGGTCACCGACACGGAATGGTTCTTCCTTGTTTCCATGACCCAGTCGTTTGTCAACGGCGGCGGGCTAGCTGGTCAGGCGTATTTCAACTCCACCCCTGTTTGGGTCGCCGGCGCTGATCGCCTCGCAGCCTCCGCCTGCGAGAGGGCCAGGCAGGGGCAGCTCTTCGGAATCCAGACGCTCGTCTGCGTGCCGTCTGCAAACGGCGTCGTTGAACTCGGATCCACTGAGCTGATTTACCAGAACTCCGATCTGATGAACAAGGTGAAGGTGCTGTTCAATTTCAGCAACAGCAACCTCGATTTGGGTTCTTCCTGGACATTGGGTTCCACCACCACCGCCGAGAATGACCCTTCCGCCCTCTGGCTCGCCGACCCCGACCCTGACGGCAGAGATTCCGTCAGCACCGTCGCTCCCACCACCGCTTCCGTTTCGATTCCCAGCCACCACAACAACGATCAGAGCATTGCGAAGACGTTGCAGTTCGAAACCCCTGTTTCGAGTACCTTGACTGAAACCCCGAGTGCTGTTAATCTCACAAACCAGCCATCGCAGAACCAGAGAAACCAGAGCAGCTTCTTCTCCAGGGAGATGAATTTCTCCGAGTACAGTTTCGATGCGAAGAACGGCAGCAGTAACCACCAGCATCTGAAGCCGGAATCCGGTGAGATTCTGAGCTTCGGTGACAGCAAGAGAACCCCCAATTTCTTCTCCGGCCAGTCGCAGTTCGTTCCGGCTGTCGAGGAGAACAACAACGGGAAGAAGAGGTCACCGAATTCGAGAAGCAGCAACGACGACGGGATGCTTTCATTCACCTCCGGCGTGATTCTCCCGTCCTCGAATTTGAAATCCTCCACCGGCGGCGGCGATTCGGAGCATTCAGATCTGGAAGCTTCGGTGGTGAAGGAAGCCGACAGCAGCAGGTTGGTGGAGCCGGAGAAGCGACCTAGGAAGAGGGGGAGGAAACCGGCGAACGGCAGAGAGGAACCGTTGAACCACGTTGAAGCAGAGAGGCAGAGGAGGGAGAAGCTTAACCAGAGATTCTACGCGCTTCGCGCGGTGGTTCCGAACGTGTCGAAGATGGACAAAGCTTCACTGCTAGGAGACGCTATATCCTACATCACGGAGCTGAAGACCAAGCTTCAGAGTTCAGAATCGGATAAAACTGGGTTGCAGAAGCAATTTGATGCGATGAAGAAGGAGCTGGAGAAAACCAGTGAACAGTCTTCTTCTCCAACTCCACCTCCACCTAACAAGAACAAGTCCTTCTCCTCATCCTCCTCCTCTTCCAATCAGATTCTAGTGGAGGACATTGACGTGAAGATCATTGGGTGGGATGCAATGATAAGGGTCCAATGCAGCAAGAAGAACCACCCGGCCGCGATTTTGATGGCGGCGTTGATGGAGCTGGACCTTGAGGTGAACCATGCTAGTGTGTCAGTGGTGAATGATACCATGATCCAGCAAGCAACAGTGAAGATGGGAAGCCGCTTTTACACTCAGGAGCAGCTTCGATCAGCACTCTCTTCCAAATTTGGGGATGCTCCTTAG 1959 0.5539 MNLWSDDNSSVMEAFMTSSDLSSVWPPAPPPPSQSSVAVLNQDTLQQRLQALIEGARETWTYAIFWQPSYDYSGTSLLGWGDGYYKGEEDKAKAKAKAKAKATSSAEQEHRRKVLRDLNSLISGSSAPASDDAVDEEVTDTEWFFLVSMTQSFVNGGGLAGQAYFNSTPVWVAGADRLAASACERARQGQLFGIQTLVCVPSANGVVELGSTELIYQNSDLMNKVKVLFNFSNSNLDLGSSWTLGSTTTAENDPSALWLADPDPDGRDSVSTVAPTTASVSIPSHHNNDQSIAKTLQFETPVSSTLTETPSAVNLTNQPSQNQRNQSSFFSREMNFSEYSFDAKNGSSNHQHLKPESGEILSFGDSKRTPNFFSGQSQFVPAVEENNNGKKRSPNSRSSNDDGMLSFTSGVILPSSNLKSSTGGGDSEHSDLEASVVKEADSSRLVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQSSESDKTGLQKQFDAMKKELEKTSEQSSSPTPPPPNKNKSFSSSSSSSNQILVEDIDVKIIGWDAMIRVQCSKKNHPAAILMAALMELDLEVNHASVSVVNDTMIQQATVKMGSRFYTQEQLRSALSSKFGDAP* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0849 652 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 534 IPR036638 GO:0046983
Lja2g0849 652 Coils Coil 510 544 - -
Lja2g0849 652 MobiDBLite consensus disorder prediction 367 428 - -
Lja2g0849 652 MobiDBLite consensus disorder prediction 360 474 - -
Lja2g0849 652 Gene3D - 456 545 IPR036638 GO:0046983
Lja2g0849 652 PANTHER MYC 33 648 IPR045084 GO:0003700|GO:0006355
Lja2g0849 652 MobiDBLite consensus disorder prediction 536 564 - -
Lja2g0849 652 PANTHER TRANSCRIPTION FACTOR MYC2 33 648 - -
Lja2g0849 652 MobiDBLite consensus disorder prediction 302 327 - -
Lja2g0849 652 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Lja2g0849 652 SMART finulus 470 519 IPR011598 GO:0046983
Lja2g0849 652 MobiDBLite consensus disorder prediction 431 474 - -
Lja2g0849 652 CDD bHLH_AtAIB_like 461 537 - -
Lja2g0849 652 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 229 IPR025610 -
Lja2g0849 652 Pfam Helix-loop-helix DNA-binding domain 468 513 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0849 Lja-Chr2 7927616 7930135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0849 1 649 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.605 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0849 bHLH-MYC_N 2.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0849 K13422 - gmx:100776289 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0849 2 7927616 7930135 Lja2g0849 2 7927616 7930135 ECH